PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0167879.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 714aa MW: 81309.2 Da PI: 5.6292

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0167879.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.7	2.9e-108	338	711	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + lLl cA+a++++d+++a++lL+++++++sp gd qRla+yf+++L+arl + + + +++ + +++ ++ ++ ++++ P+ kf+h Lj0g3v0167879.1 338 RALLLLCAQAIHANDNRAANELLKQIRQHSSPFGDGSQRLAHYFANGLEARLIGDGAAAQQFFNAPTFKTTFGADFFKGYQVYLASNPFKKFAH 431 6799************************************************999999999*9999****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + N++I +a++++e++H+iDf+i G+QWp L++ L++R++gpp+lRiTg++ p +g ++++eetg+rLa+++++++vpfe+++++++++e Lj0g3v0167879.1 432 FYVNKMIKKAAAKAETLHVIDFGIFFGFQWPLLIKFLSEREGGPPKLRITGIEYPLPGfrPTQRIEETGRRLANYCKRFNVPFEYTAIASRNWE 525 ***************************************************99999***********************9999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L++k++E +aVn++++ ++llde+++++s+rd vL+l++s++P+++ + + + n++ F++rf eal yys+++d +++ +p+e+ + Lj0g3v0167879.1 526 TIRVEDLKIKSNEFVAVNCMMRFKNLLDETTEMNSPRDVVLHLIRSINPDIFAQSIVNGSFNAPFFVTRFREALFYYSTVYDIFDSVIPQEHPW 619 ******************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+++E e++gr nv+aceg er+er et+++W+ r ++aGFk++pl++k +++ ++ lrk + d + ++e++++++++Wk+r + + W Lj0g3v0167879.1 620 RMMIEWEIVGRISLNVIACEGLERFERPETYKQWQVRNKRAGFKQLPLNQKLMAKFRSKLRKWHHDDFVIDEDNNWMLQCWKGRIICGSTIW 711 ************************************************************999*****************999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.566	311	692	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-105	338	711	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MDPTFYGDSD FTNGYQFCEE GNIFVSDPNP YAAYWDVYHQ HVDPLGFAAN TSSVEEGSVT 60 SMSMNSVTDP SLEDTDFSET TKFISQILME ENLEQGPFYD SLSLQLTEKS FHDALIENNS 120 SLSPNQHHFN VRSPYCETTS SDSDNSSNLH YNSGELNSPP LDTPVAVIGN HAFQLNSHGL 180 LDLDSSVTKP LAQNIFSDAD SVSQFRRGLE EATKFLHPPE PLIETGLDSR GESSNIVEEN 240 SFGLKGRRKS REREESDSNE EGRSTKQSAV GVVDEDDLSD MFERVLINME QLPLGNEHDS 300 IESGLAKEKQ QGEKPPSSDG RKAHPKKQGR KKETVDVRAL LLLCAQAIHA NDNRAANELL 360 KQIRQHSSPF GDGSQRLAHY FANGLEARLI GDGAAAQQFF NAPTFKTTFG ADFFKGYQVY 420 LASNPFKKFA HFYVNKMIKK AAAKAETLHV IDFGIFFGFQ WPLLIKFLSE REGGPPKLRI 480 TGIEYPLPGF RPTQRIEETG RRLANYCKRF NVPFEYTAIA SRNWETIRVE DLKIKSNEFV 540 AVNCMMRFKN LLDETTEMNS PRDVVLHLIR SINPDIFAQS IVNGSFNAPF FVTRFREALF 600 YYSTVYDIFD SVIPQEHPWR MMIEWEIVGR ISLNVIACEG LERFERPETY KQWQVRNKRA 660 GFKQLPLNQK LMAKFRSKLR KWHHDDFVID EDNNWMLQCW KGRIICGSTI WVPA

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MDPTFYGDSD FTNGYQFCEE GNIFVSDPNP YAAYWDVYHQ HVDPLGFAAN TSSVEEGSVT  60
SMSMNSVTDP SLEDTDFSET TKFISQILME ENLEQGPFYD SLSLQLTEKS FHDALIENNS  120
SLSPNQHHFN VRSPYCETTS SDSDNSSNLH YNSGELNSPP LDTPVAVIGN HAFQLNSHGL  180
LDLDSSVTKP LAQNIFSDAD SVSQFRRGLE EATKFLHPPE PLIETGLDSR GESSNIVEEN  240
SFGLKGRRKS REREESDSNE EGRSTKQSAV GVVDEDDLSD MFERVLINME QLPLGNEHDS  300
IESGLAKEKQ QGEKPPSSDG RKAHPKKQGR KKETVDVRAL LLLCAQAIHA NDNRAANELL  360
KQIRQHSSPF GDGSQRLAHY FANGLEARLI GDGAAAQQFF NAPTFKTTFG ADFFKGYQVY  420
LASNPFKKFA HFYVNKMIKK AAAKAETLHV IDFGIFFGFQ WPLLIKFLSE REGGPPKLRI  480
TGIEYPLPGF RPTQRIEETG RRLANYCKRF NVPFEYTAIA SRNWETIRVE DLKIKSNEFV  540
AVNCMMRFKN LLDETTEMNS PRDVVLHLIR SINPDIFAQS IVNGSFNAPF FVTRFREALF  600
YYSTVYDIFD SVIPQEHPWR MMIEWEIVGR ISLNVIACEG LERFERPETY KQWQVRNKRA  660
GFKQLPLNQK LMAKFRSKLR KWHHDDFVID EDNNWMLQCW KGRIICGSTI WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-47	321	713	3	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0167879.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505853.1	0.0	scarecrow-like protein 34
TrEMBL	A0A1S2YJS7	0.0	A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRING	XP_004505853.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-176	GRAS family protein