PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0135239.1 | ||||||||
Common Name | nsp2, TINod | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 174aa MW: 19087.5 Da PI: 10.7326 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 153.1 | 2.6e-47 | 1 | 171 | 120 | 292 |
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 ++G+QW++L+qaLas p+g p+lRiT+++++ g s +++etg+rL+ fA++lg pf+f+ ++ e++++ L++ +gEal+ n++l+l Lj0g3v0135239.1 1 MEGVQWASLMQALASNPNG-PHLRITALSRSGVGrrSMATVQETGRRLTAFATSLGQPFSFHHCRLESDETFRPAGLKLVRGEALVFNCMLNLP 93 58**************999.9*********7666999**************************99999************************** PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +l +s ++ ++L + k l+P++v+vve+e+ + F+erf+++l+++sa+fdslea++p + ++r+ vEr++lg+ Lj0g3v0135239.1 94 HLTYRSPNSVA---SILTAAKALRPRLVTVVEEEVGSALGGFVERFMDSLHHFSAVFDSLEAGFPMQGRARALVERVFLGP 171 *9966666666...9**************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.8E-45 | 1 | 171 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 28.843 | 1 | 174 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEGVQWASLM QALASNPNGP HLRITALSRS GVGRRSMATV QETGRRLTAF ATSLGQPFSF 60 HHCRLESDET FRPAGLKLVR GEALVFNCML NLPHLTYRSP NSVASILTAA KALRPRLVTV 120 VEEEVGSALG GFVERFMDSL HHFSAVFDSL EAGFPMQGRA RALVERVFLG PRXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-23 | 1 | 169 | 138 | 296 | Protein SCARECROW |
5b3h_A | 3e-23 | 1 | 169 | 137 | 295 | Protein SCARECROW |
5b3h_D | 3e-23 | 1 | 169 | 137 | 295 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0135239.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009782 | 0.0 | AP009782.1 Lotus japonicus genomic DNA, clone: LjT26J05, TM1976, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499407.1 | 1e-105 | nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 1e-103 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | Q2PEG7 | 1e-116 | Q2PEG7_LOTJA; Nodulation signaling pathway 2 | ||||
STRING | XP_004499407.1 | 1e-105 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6264 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-69 | GRAS family protein |
Publications ? help Back to Top | |||
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