PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0117159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 604aa    MW: 68847.5 Da    PI: 6.1748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0117159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09397437346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l++a  q+G++ Wk+Ia+ ++  + + ++k+ w+ 
  Lj0g3v0117159.1 397 KWTPEELDFLLKAQDQHGSD-WKLIAEALN--KHRLHVKDTWRR 437
                      8*******************.********8..567788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.391317385IPR017877Myb-like domain
SMARTSM007171.2E-4321392IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-7323411IPR009057Homeodomain-like
PROSITE profilePS5129410.033392443IPR017930Myb domain
SMARTSM007173.9E-4394441IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-9396452IPR009057Homeodomain-like
CDDcd001670.00126397426No hitNo description
PfamPF139214.2E-12398456No hitNo description
Gene3DG3DSA:1.10.10.606.3E-8412448IPR009057Homeodomain-like
PROSITE profilePS500907.306440509IPR017877Myb-like domain
SMARTSM007178.8444512IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-5449510IPR009057Homeodomain-like
SuperFamilySSF466895.01E-5489569IPR009057Homeodomain-like
PROSITE profilePS500907.445511564IPR017877Myb-like domain
SMARTSM0071763515566IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MTEESDSQGN KLEKKKLHKK SKRPRDCETS NGGDDSVVTE ERQGKKMKLD KVFSKEDGRT  60
EDEDDDQGKE MKKNKKEKLI EESKSEEEYN QLRSNEGEDG DQGKEMKKNK KEKLIEESKS  120
EEEYNQLRSN EGEDGDQGKR MKKKKKLSDK SKSKNSEFNS NDGGSSLASV EEGDAKACGD  180
VTEVDDQSKK KKTKKKAKAG TDESTIPAAH GEKMKKKKLS DKSKSKISEF NSNEGDPSLA  240
SVEEGDAKAC GDVTEVDDQS KKKKTKKKAK AGTDESTIPA AHGETSKPKR VTFSDQVEVY  300
GDQVEVCGDQ VEVCGDDDLV RGKRFTPEED EKIKEAVSDY IESHGLGDEG LKMILHCMSH  360
PEVRGCWKEI GEALPHRPHQ SVYYRAHIIY ERDEARKWTP EELDFLLKAQ DQHGSDWKLI  420
AEALNKHRLH VKDTWRRIRR TNANTGRWSQ DEYQRLFDLV NKDLCARAAE DCRKNKHGML  480
RDNVSWEAIS DEFGSRASAL CCMKWYQQLT SPMVADGIWS DTDDYRLVNA LYALDACSME  540
EVDWDNLLEH RSGDVCRKRW HQMVRNIREY AGKSFAEQVE ILSKRYRPDL VEAREAFDSK  600
PVVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144QGKRMKKKK
2138144KRMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0117159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.20.0RNA polymerase I termination factor
RefseqXP_006594063.10.0RNA polymerase I termination factor
RefseqXP_006594064.10.0RNA polymerase I termination factor
RefseqXP_028198132.10.0RNA polymerase I termination factor
RefseqXP_028198133.10.0RNA polymerase I termination factor
RefseqXP_028198134.10.0RNA polymerase I termination factor
RefseqXP_028198135.10.0RNA polymerase I termination factor
TrEMBLA0A0B2SVJ40.0A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ80.0I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-115MYB_related family protein