PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0112049.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 440aa    MW: 48859.6 Da    PI: 6.3937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0112049.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.8e-19361141498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++l lpk+f ++ +  k+ +  +tl+ + g +W++ l  + k ++ +++ GW++Fvk++ Lke+Df+vFk++g+s f   v vf+
  Lj0g3v0112049.1  36 QNLALPKTFSDNLK--KKLPENVTLKGPGGVVWNIGL--TTKEDTLYFKHGWEQFVKDHSLKENDFLVFKYNGESVF--DVLVFD 114
                      4599*****85555..558889***************..9********************************99999..777776 PP
2B339.51e-12347437295
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        v+ p +v k+  +++p+k + +h ++  +s++++l++ +  +W  +++y   ++sg+  lt+GWk+F+ +n+L+e D++v++  g+ + +l 
  Lj0g3v0112049.1 347 HVVMRPTHVYKRFFVSIPNKWILNHISP--SSQDVILRSGN-GEWVARYSYhaIRHSGG--LTNGWKHFAVDNNLEEFDVCVLTPAGKVNNTLI 435
                      5688999***************999655..67799999955.58******966566655..***********************8877666566 PP

                      EE CS
               B3  94 vk 95 
                      v 
  Lj0g3v0112049.1 436 VD 437
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-2121114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.80623116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-2225114IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-1626116IPR003340B3 DNA binding domain
PfamPF023629.6E-1636112IPR003340B3 DNA binding domain
CDDcd100172.83E-2038114No hitNo description
SuperFamilySSF1019367.65E-14345435IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-14346430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.474346440IPR003340B3 DNA binding domain
SMARTSM010194.8E-6346439IPR003340B3 DNA binding domain
PfamPF023626.9E-11347437IPR003340B3 DNA binding domain
CDDcd100177.39E-16349438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MADQNCGGCR SWVDDIYWSH FQFLHFAQFL RADYEQNLAL PKTFSDNLKK KLPENVTLKG  60
PGGVVWNIGL TTKEDTLYFK HGWEQFVKDH SLKENDFLVF KYNGESVFDV LVFDGESFCE  120
KAGSYFVRKC GHATAENAGG GCSSKRRDTD NSGEEVNTPS NGGVECVSPE KSEHINSIGV  180
PFAVPIENPN EKPSNAGVEF ACPEQFMEDV VPDRNAVPSQ AVPSQTVPSQ TVTSQTVPSQ  240
TVTSQTVPSQ TVPSETDPPQ TIGKRIRKPV YAATPTPAKK RGRPPKTSSS HERSIEWVTV  300
ELEPEPASVS RTGTSELYTS NRRPVTENEI ENALHLARAA CTDFSWHVVM RPTHVYKRFF  360
VSIPNKWILN HISPSSQDVI LRSGNGEWVA RYSYHAIRHS GGLTNGWKHF AVDNNLEEFD  420
VCVLTPAGKV NNTLIVDVSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0112049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368166.10.0B3 domain-containing protein REM16
TrEMBLA0A396JQP80.0A0A396JQP8_MEDTR; Putative transcription factor B3-Domain family
STRINGXP_004499104.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-48B3 family protein