PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0103139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 266aa MW: 29854.9 Da PI: 8.2072 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 134 | 188 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Lj0g3v0103139.1 134 RKKLRLTKEQSAMLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 188 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.8 | 2e-40 | 134 | 224 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+++++l++en rL+ke +eL+ +lk Lj0g3v0103139.1 134 RKKLRLTKEQSAMLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELK-ALK 224 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-18 | 128 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 130 | 190 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-16 | 132 | 194 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 134 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.41E-17 | 134 | 191 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 134 | 188 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 165 | 188 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.3E-21 | 190 | 232 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.4E-10 | 190 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGLDQDAKNP SLQLILGLAL TLTPEDQTTN RSPSNKVVAD HEPNPTQPRK LYPEAEPSLT 60 LGLSGESYPQ KVVKVNKNKV FYGEDGLDLS TTQTSPHCST VSSFSSGKVK RERDHGSEEV 120 DTAEIDEDGA TAARKKLRLT KEQSAMLEES FKQHSTLNPK QKQALARQLN LRPRQVEVWF 180 QNRRARTKLK QTEVDCDFLK KCCETLTDEN MRLQKELQEL KALKTQPLYM PMPAATLTMC 240 PSCERLCSMA SKPHFFNPFT NPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 190 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2047 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0103139.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT133941 | 0.0 | BT133941.1 Lotus japonicus clone JCVI-FLLj-11J7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346594.1 | 1e-125 | homeobox-leucine zipper protein HAT22 isoform X1 | ||||
Swissprot | P46604 | 6e-85 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | I3S0E4 | 0.0 | I3S0E4_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA11G04840.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-73 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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