PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0056199.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 242aa    MW: 27632.5 Da    PI: 8.6729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0056199.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008496117323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      C+ C+++++++ +L  H +  H
  Lj0g3v0056199.1  96 CSVCSRVYPTSRLLSIHVSEeH 117
                      99***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.96691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806892IPR007087Zinc finger, C2H2
SMARTSM003556.394117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SMARTSM003550.033132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMEVEKPNLE SGFPFWKPLP RMFPPDSPFF APGNLERELL AKQVALEFPE EKLELENWIQ  60
EEAREVFCPI VGCRARLKSL EDFENHYSAR HHSACCSVCS RVYPTSRLLS IHVSEEHDSF  120
FKAKVARGYD VYECLVEGCG LKFKSYTSRK QHLVDKHGFP KSFQFFKKAA PSKKERLKTQ  180
HKQAAHKEDA SGMMEVENAA MDDLVSAVSR LNTSDSTPSS ISFGRRPKGL SFVPRSVQRG  240
NR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.4620.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0056199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352691.11e-141zinc finger protein 511
TrEMBLA0A371G3761e-139A0A371G376_MUCPR; Zinc finger protein
STRINGXP_004513314.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106zinc ion binding;nucleic acid binding;zinc ion binding