PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0042839.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 72aa MW: 8164.04 Da PI: 4.7712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 24 | 66 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+++ k+ G + W +Ia +++ gRt++++ +w Lj0g3v0042839.2 24 KNEFSEDEEFLIIRMYKLVGER-WPLIAGRIP-GRTAEEIEKYWT 66 6789******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.399 | 19 | 69 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-8 | 23 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-9 | 23 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-9 | 24 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.70E-8 | 26 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 26 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:1900033 | Biological Process | negative regulation of trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MADTGRSSDK ISAVSSEQSG QASKNEFSED EEFLIIRMYK LVGERWPLIA GRIPGRTAEE 60 IEKYWTSRYS SS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes and non-root hair cells. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0042839.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238114 | 4e-39 | KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022734373.1 | 2e-30 | MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 2e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A4P1RPK1 | 2e-29 | A0A4P1RPK1_LUPAN; Uncharacterized protein | ||||
STRING | XP_010240919.1 | 4e-29 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 8e-19 | MYB_related family protein |