PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0017249.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 492aa    MW: 53832.2 Da    PI: 4.9193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0017249.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.64.5e-1031014851374
             GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevs 88 
                      lv+lL+++Aea++  +++  la+a+L rl+el+s ++ ++m+Rlaayft AL+  l +    ++l k    + + +e+ +++ laa++l++++s
  Lj0g3v0017249.1 101 LVHLLMAAAEALTGANKShdLARAILIRLKELVSHTAnTNMERLAAYFTDALQGLLDGaaGAHNLNKNSvVAGPHREDPQTDMLAAFQLLQDMS 194
                      68**********98666555************99988799****************99622344444441444444444*************** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp..pslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                      P++kf+h+taNqaIleav++e+rvHiiDfd+s+G+QW++L+qaL+sR++gp  p+lRiT+++++        s  +++etg+rL+ fA+++g p
  Lj0g3v0017249.1 195 PYIKFAHFTANQAILEAVAHERRVHIIDFDVSEGAQWASLIQALSSRKDGPsgPHLRITALSRSCGRgggrrSIATVQETGRRLTAFAASVGQP 288
                      ************************************************765338*********655489999999******************* PP

             GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalf 268
                      f+f+    +  e++++++L++ +gEal+ n+vl+l +l  +    ++ + ++L+  ++lsPk+v+++e+e+   +++ F+  f+++l+ ysa+ 
  Lj0g3v0017249.1 289 FSFHQCRLDPDETFRTSSLKLVRGEALVFNCVLHLPHLNYRA---PDSIASFLSGARELSPKLVTLAEEEVGPvGDAGFVGLFMDSLHRYSAMC 379
                      *****9999****************************98444...444569*******************9988******************** PP

             GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlg 361
                      dslea++p +  +r  vEr++lg++i++ va   +  +e++e  ++W e+l ++GF+ vp+s ++ +qaklll  ++ dgyrvee  ++ lvl 
  Lj0g3v0017249.1 380 DSLEAGFPMQRWARGLVERVFLGPRITSSVARLYRTGEEDEEGSGSWGEWLVASGFRGVPISFTNHCQAKLLLGLFN-DGYRVEELsNNKLVLS 472
                      *****************************************************************************.******86488999** PP

             GRAS 362 WkdrpLvsvSaWr 374
                      Wk+r+L+s+S+W+
  Lj0g3v0017249.1 473 WKSRRLLSASVWT 485
                      ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.28775465IPR005202Transcription factor GRAS
PfamPF035141.6E-100101485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDMEIDIDDL LDFYGHSSTT PSSDDGGNWV PCSPLVDWDS FTAAADHDDF HHIIDSFMDY  60
TLPAGDLTPE EESIGERSAT TTEEEDDEAT AADHSGKGLR LVHLLMAAAE ALTGANKSHD  120
LARAILIRLK ELVSHTANTN MERLAAYFTD ALQGLLDGAA GAHNLNKNSV VAGPHREDPQ  180
TDMLAAFQLL QDMSPYIKFA HFTANQAILE AVAHERRVHI IDFDVSEGAQ WASLIQALSS  240
RKDGPSGPHL RITALSRSCG RGGGRRSIAT VQETGRRLTA FAASVGQPFS FHQCRLDPDE  300
TFRTSSLKLV RGEALVFNCV LHLPHLNYRA PDSIASFLSG ARELSPKLVT LAEEEVGPVG  360
DAGFVGLFMD SLHRYSAMCD SLEAGFPMQR WARGLVERVF LGPRITSSVA RLYRTGEEDE  420
EGSGSWGEWL VASGFRGVPI SFTNHCQAKL LLGLFNDGYR VEELSNNKLV LSWKSRRLLS  480
ASVWTSSDDS NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5510948526378Protein SCARECROW
5b3h_D5e-5510948526378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0017249.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097810.0AP009781.1 Lotus japonicus genomic DNA, clone: LjT15C06, TM1975, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614758.20.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A396HRK90.0A0A396HRK9_MEDTR; Putative transcription factor GRAS family
TrEMBLG7K8U70.0G7K8U7_MEDTR; GRAS family transcription factor
STRINGAES977160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-142GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]