PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0012409.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28304.1 Da    PI: 9.3214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0012409.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.3e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ienk nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fss+gklyeyss
  Lj0g3v0012409.1  9 KKIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLYEYSS 59
                     68***********************************************96 PP
2K-box105.66e-35831749100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++  ++e+++ e+akLk++ e Lqr+qR+++Ge+L+ Ls+keLq+Le+qL+++lk+iRs+Kn+l++e+i+el kk k+lqe+n+ L+kk++e
  Lj0g3v0012409.1  83 NDPPQNENWTLEHAKLKARFEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMHESISELNKKDKALQEQNNLLSKKIKE 174
                      556789***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.548161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-35293IPR002100Transcription factor, MADS-box
CDDcd002656.58E-43276No hitNo description
PRINTSPR004048.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2987172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.76588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVQLKK IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLYEYSSD  60
PCMERILERY ERYSYAERKI AANDPPQNEN WTLEHAKLKA RFEVLQRNQR NFMGEELDGL  120
SIKELQNLEH QLDSALKHIR SRKNQLMHES ISELNKKDKA LQEQNNLLSK KIKEKEKVAA  180
QQAQLERHSD DIDHLTSSVL VPLQLETLNI GGSLQGTSDG RDNEATTTQT QANSLLPPWM  240
LRPMNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q4e-22174173Myocyte-specific enhancer factor 2B
1tqe_R4e-22174173Myocyte-specific enhancer factor 2B
1tqe_S4e-22174173Myocyte-specific enhancer factor 2B
6c9l_A4e-22174173Myocyte-specific enhancer factor 2B
6c9l_B4e-22174173Myocyte-specific enhancer factor 2B
6c9l_C4e-22174173Myocyte-specific enhancer factor 2B
6c9l_D4e-22174173Myocyte-specific enhancer factor 2B
6c9l_E4e-22174173Myocyte-specific enhancer factor 2B
6c9l_F4e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.43243e-37pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0012409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234496.11e-145truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-113AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D6NM931e-134A0A4D6NM93_VIGUN; MADS-box transcription factor
TrEMBLV7B1N11e-134V7B1N1_PHAVU; Uncharacterized protein
STRINGXP_007138377.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-112AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]