PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1991s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 190aa MW: 21831.8 Da PI: 10.2817

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1991s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.2	1.4e-28	25	112	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA +vGF +r+sk ++s+r+g+ + r +vC+keg+r+ ++++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Kalax.1991s0002.1.p 25 FYNAYAARVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRSADRRE--KVVRQRAETRVGCRAMILVRKINSGKWVVTKFVSEHTHALTP 112 ****************************************9988..999**********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-26	25	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MASSVNGEEP YVGQEFDSES AAHAFYNAYA ARVGFVIRVS KLSRSRRDGS AIGRALVCNK 60 EGYRSADRRE KVVRQRAETR VGCRAMILVR KINSGKWVVT KFVSEHTHAL TPGKCRRDLI 120 YDQFPNEHDK IRELTQQLAT EKKRAARYKR HLEMIFQYIE EHNEGLAKKV QHIVDSVKDL 180 ESKEQRKHT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267960.1	1e-115	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	D7U1S1	1e-113	D7U1S1_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00690.t01	1e-114	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-93	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1991s0002.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]