PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1639s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26954.9 Da PI: 8.0119 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 9.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRr+g+lKKA+ELS+LCd++v v+ifsstgkly+++s Kalax.1639s0001.2.p 9 ERIDNTTSRQVTFSKRRKGLLKKAKELSILCDVQVGVMIFSSTGKLYDFAS 59 69***********************************************86 PP | |||||||
2 | K-box | 80.2 | 4.9e-27 | 75 | 169 | 6 | 97 |
K-box 6 gks...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 g++ +++ + +++e+a L+ ++++Lq+ +R++ Ge+L+sL+++eLq+Le+qLe lk iR kK+e+++++ieel++ke+ +q+e+ Kalax.1639s0001.2.p 75 GNQlhlESSNSVKFWKNEAATLQHQLQSLQEDHRKVFGEELSSLTIQELQHLENQLEMNLKCIRMKKDEIMVAEIEELRQKERLIQQETL 164 5555545677789***************************************************************************** PP K-box 93 aLrkk 97 +Lr++ Kalax.1639s0001.2.p 165 DLRNQ 169 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.72E-39 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-30 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-23 | 82 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.535 | 86 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGKIVIER IDNTTSRQVT FSKRRKGLLK KAKELSILCD VQVGVMIFSS TGKLYDFASN 60 ASIKSTIEQY NKLKGNQLHL ESSNSVKFWK NEAATLQHQL QSLQEDHRKV FGEELSSLTI 120 QELQHLENQL EMNLKCIRMK KDEIMVAEIE ELRQKERLIQ QETLDLRNQA VCYIKNTEVH 180 SAQAPRVKAA PLHTRELCWE DDTLEHVQLQ LSQPQPQPQG SELSPGNIMI GLHLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006593452.1 | 2e-76 | MADS-box transcription factor NMHC5 isoform X2 | ||||
Refseq | XP_014620688.1 | 2e-76 | MADS-box transcription factor NMHC5 isoform X2 | ||||
Refseq | XP_028187086.1 | 2e-76 | MADS-box transcription factor 23-like isoform X2 | ||||
Refseq | XP_028187087.1 | 2e-76 | MADS-box transcription factor 23-like isoform X2 | ||||
Swissprot | A2RVQ5 | 3e-71 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A368UHB7 | 5e-75 | A0A368UHB7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G32810.1 | 8e-76 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-69 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1639s0001.2.p |
Publications ? help Back to Top | |||
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