PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1615s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28269.1 Da    PI: 9.241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1615s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.2e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gklye++s
  Kalax.1615s0001.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNKGKLYEFCS 59
                         79***********************************************96 PP
2K-box85.21.3e-28871741097
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          e+a + s+qqe+ kLk++++ Lqr+qR+llGedL++L+ keL+ Le+qL++slk+iR ++++ +l+ + +lq+ke +l+e+n +L+++
  Kalax.1615s0001.1.p  87 EKALELSSQQEYLKLKARYDALQRSQRNLLGEDLGPLNSKELEALERQLNSSLKQIRLTRTQTMLNTLTDLQRKEYMLNETNSSLKQR 174
                          44555689*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.997161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.15E-45276No hitNo description
PRINTSPR004043.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.86291182IPR002487Transcription factor, K-box
PfamPF014867.1E-2393175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFSN KGKLYEFCST  60
SSMPKTLERY QSCSYGEPAE TGASAKEKAL ELSSQQEYLK LKARYDALQR SQRNLLGEDL  120
GPLNSKELEA LERQLNSSLK QIRLTRTQTM LNTLTDLQRK EYMLNETNSS LKQRLFGEHH  180
QMNAPQWNPN APDNLGYAQQ ATQNQGDGFF VQLEPTLQIG PYNHEAVAPM DVVAAGPSVT  240
NYMHGRWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-38751751101Developmental protein SEPALLATA 3
4ox0_B2e-38751751101Developmental protein SEPALLATA 3
4ox0_C2e-38751751101Developmental protein SEPALLATA 3
4ox0_D2e-38751751101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022724906.11e-123agamous-like MADS-box protein AGL9 homolog isoform X1
SwissprotQ8LLR01e-124MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A061EBY61e-121A0A061EBY6_THECC; K-box region and MADS-box transcription factor family protein isoform 1
STRINGEMJ250071e-121(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-105MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]