PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1601s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 325aa    MW: 36042.7 Da    PI: 8.8871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1601s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-1574121148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+ Ed++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.1601s0001.1.p  74 KGAWTKGEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 121
                          79******************************99************97 PP
2Myb_DNA-binding55.91e-17127171147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEde +++++ +lG++ W++Ia +++ gRt++++k++w+++
  Kalax.1601s0001.1.p 127 RGNFTEEEDEMIIKLHGLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 171
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-2265124IPR009057Homeodomain-like
PROSITE profilePS5129415.36569121IPR017930Myb domain
SMARTSM007171.4E-1173123IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-2873168IPR009057Homeodomain-like
PfamPF002491.5E-1374121IPR001005SANT/Myb domain
CDDcd001677.78E-976121No hitNo description
PROSITE profilePS5129428.504122176IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-28125176IPR009057Homeodomain-like
SMARTSM007173.5E-17126174IPR001005SANT/Myb domain
PfamPF002497.5E-16127171IPR001005SANT/Myb domain
CDDcd001671.50E-12129172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLLIVKNQNH YKNQIPIPHS QTRPPSLPLQ TLTEHQKQRK KQSTATSEYQ PPAAASAASE  60
MGRSPCCEKA HTNKGAWTKG EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  120
LRPDLKRGNF TEEEDEMIIK LHGLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  180
IDPASHRSID NPSSSPDLHA AASATATISF SAPTKPTQEL DHFNNHTSFV NVFSSKPEEQ  240
TRSSSIEPQD HCPDLNLELK ISPPCPSSNP QQPLIETGAH RLCFSCSLGL RRGEECGCGV  300
RNGSRGSVVM SSVGYDFLEI EIKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-277317626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200603.11e-115myb-related protein 308
RefseqXP_021810486.11e-115myb-related protein 308-like
SwissprotP813931e-107MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A314ZAJ71e-114A0A314ZAJ7_PRUYE; Myb-related protein 308
TrEMBLH6S3741e-114H6S374_PRUAV; R2R3-MYB transcription factor
TrEMBLM5VKX81e-114M5VKX8_PRUPE; R2R3-MYB transcription factor
STRINGEMJ018021e-115(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-96myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]