PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1209s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 356aa    MW: 38937.5 Da    PI: 5.4548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1209s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.8e-121996286
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                         +k + ps+ +    l+l+ kf+ eh   ++e+ +++lede+g+  + k+   kk     l++GW++F  a++L  gD+ vF+l+ 
  Kalax.1209s0004.1.p 19 VKFMHPSSCSGGFSLSLSIKFC-EHL--PPEDCEVVLEDEEGQLTRTKYLAVKKA----LSAGWRGFSIAHQLLPGDVAVFQLVA 96
                         57888999999999********.553..235569***************655555....9**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1213104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1413104IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-1616104No hitNo description
PROSITE profilePS508638.57218112IPR003340B3 DNA binding domain
SMARTSM010191.9E-718112IPR003340B3 DNA binding domain
PfamPF023623.2E-91997IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVRAESIRAG LRPDLPSLVK FMHPSSCSGG FSLSLSIKFC EHLPPEDCEV VLEDEEGQLT  60
RTKYLAVKKA LSAGWRGFSI AHQLLPGDVA VFQLVAPCRM KVSVPVTLFD IIVSVWFGFH  120
QLDGQVAFSA FQVHIVRASS CPAGAAEVKN TGNRQEADRP PGLAMVVYKE DKQGNGSADV  180
TTDECFNCSP AGSETIDGIR FSESNITFKE VTSFQDFHIA VNGLIIDCEF SPDTRLKYYE  240
LCKTRSMFLH EHLLEGINCK LAAGIIIETV NIADAVRAAG PSTPEEDVAV WSRTLEAVAG  300
LGMRVEFLCE RLSCRVSRVS EADKRGDALQ VKLLEVQEAA RKFHAEIEAL RRVDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-16B3 family protein