PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1094s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 341aa    MW: 38444.1 Da    PI: 6.1834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1094s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.6e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEd++l+++++ +G g+W++ +r  g+ R++k+c++rw +yl
  Kalax.1094s0002.1.p 14 RGRWTAEEDQILIKYIQDHGEGSWRSLPRNAGLMRCGKSCRLRWVNYL 61
                         8*********************************************97 PP
2Myb_DNA-binding54.72.4e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k++w++yl
  Kalax.1094s0002.1.p  67 RGNISPQEEDLIIKLHATLGNR-WSLIASQLP-GRTDNDIKNHWNSYL 112
                          7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.993961IPR017930Myb domain
SuperFamilySSF466892.13E-2911108IPR009057Homeodomain-like
SMARTSM007173.6E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-221568IPR009057Homeodomain-like
CDDcd001675.68E-111661No hitNo description
PROSITE profilePS5129425.71762116IPR017930Myb domain
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2469116IPR009057Homeodomain-like
CDDcd001672.54E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPCRAKA GLKRGRWTAE EDQILIKYIQ DHGEGSWRSL PRNAGLMRCG KSCRLRWVNY  60
LRTDLKRGNI SPQEEDLIIK LHATLGNRWS LIASQLPGRT DNDIKNHWNS YLSRSINLWR  120
RPAASDTLPQ HILDNLAKLS AKLNNNPSTK KKSNERNVAA IKETGDKQIP VNPHDNNDKL  180
QTTPDVHKQD LLPTRNSWSQ KCFESILFLL EDQQDNAEEM EMGPLENYID ELVSLSDDMV  240
ANTATPQTIF SNEILLSPTA IHLEFMNNED FLRSTTSQAE MGSSCSLSTQ QQQPSLSPSP  300
SSLSLSSHFT IDQPLCISGA DLNWEDYLVD NPDHHDLMKS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622107.19e-71PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S4AUR17e-69A0A1S4AUR1_TOBAC; transcription factor MYB12-like
STRINGXP_009622107.14e-70(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-66myb domain protein 12