PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1071s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 343aa    MW: 38554.1 Da    PI: 7.378
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1071s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.6e-18228262135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.1071s0005.1.p 228 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 262
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.0E-7220317IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.492222258IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16222272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14223259IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.0E-15224286No hitNo description
CDDcd002028.76E-14227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15228262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEALDFYQTG FCYRSGAPEK RLPNVDPIKQ EPFVVEEFLD FSNDEDHVAT ADVKLTPPAF  60
DGCHGLNSAE SSSVTAVDSC NGCNENSFSE PHVLGEIGQR SLLDRSFAGE LCVPHDDLAE  120
LEWLSTLQEE SFSSEDMQKL QLISGMAARA DIEPNKPNSS FRPKMPVPGK ARSKRSRAAP  180
GNWASHLLVL SPTTSTSENE RPLSPKTVTK RKDGRDRDRH APSDGRKCLH CATDKTPQWR  240
TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVLELR RQKEMHHRQP  300
QPHHLHHHHH HHFLHQSLIY DMSNGEDYLI HQHTGPDYRQ LI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.11e-132PREDICTED: GATA transcription factor 12-like
SwissprotP697818e-83GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8AW421e-131A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-85GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]