PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1068s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38813.3 Da PI: 8.4275 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 195 | 228 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt TplWR+gp+g+k+LCnaCG+++rk + Kalax.1068s0011.1.p 195 CSDCNTTRTPLWRSGPQGPKSLCNACGIRQRKAR 228 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.637 | 189 | 225 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-13 | 189 | 229 | No hit | No description |
SMART | SM00401 | 9.9E-20 | 189 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 193 | 229 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.44E-13 | 194 | 226 | No hit | No description |
Pfam | PF00320 | 2.0E-16 | 195 | 228 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 195 | 220 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMTPIFLNPP NTQYFDLNNQ DHHQEDQLQQ VLLASSPFCP TIAASSTSIH LDQGLRISAT 60 HIMSDQSHAF NDQLEASKNV FSFGESPPYE AQMTNTDNYG SHNRDLFIFK QQEDQEQNNL 120 RGTGGNMTAD SNGSSLRWMS SKMRMMRKMI NSNGPKIDPR GGSRIITSSI SPDHSPQVGI 180 NSDNNNNNHN MIRVCSDCNT TRTPLWRSGP QGPKSLCNAC GIRQRKARKA AMEAAAAAAT 240 NSSCEASSST STKTTIKLMI NKDKKKSRAT SNTCVSQHSN KKQTPCKQQA SQLADSDHNN 300 SCISSSRKQQ LSFEEFAVNL LSKNAAFHRM FPQDEEEGAL LLMALSCGLI QS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-25 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1068s0011.1.p |