PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1051s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 270aa    MW: 31263.2 Da    PI: 4.6522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1051s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-1557104148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W ++Edell+  v ++G g+W++ a+t g+ R++k+c++rw++yl
  Kalax.1051s0008.1.p  57 KGPWDEDEDELLKASVIEMGEGRWESLAQTSGLLRSGKSCRLRWLNYL 104
                          79******************************99************97 PP
2Myb_DNA-binding51.91.7e-16111153246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          gr++ eE+e ++++ +qlG++ W++Iar+++ gRt++++k++w++
  Kalax.1051s0008.1.p 111 GRMSVEEEEVIIRLQQQLGNK-WSRIARMLP-GRTDNEIKNYWRT 153
                          799******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.17852104IPR017930Myb domain
SuperFamilySSF466893.83E-2754151IPR009057Homeodomain-like
SMARTSM007174.2E-1256106IPR001005SANT/Myb domain
PfamPF002492.2E-1257104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1858111IPR009057Homeodomain-like
CDDcd001672.41E-859104No hitNo description
PROSITE profilePS5129423.618105159IPR017930Myb domain
SMARTSM007171.3E-14109157IPR001005SANT/Myb domain
PfamPF002491.6E-13111153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-22112158IPR009057Homeodomain-like
CDDcd001676.27E-10112153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSFMLHVDCG VPLLLHIYIY IYIYIYIYIY IYKPCKTWDL WELIKKMASN QECNLRKGPW  60
DEDEDELLKA SVIEMGEGRW ESLAQTSGLL RSGKSCRLRW LNYLRPNLKQ GRMSVEEEEV  120
IIRLQQQLGN KWSRIARMLP GRTDNEIKNY WRTRVRRQQW ENRKLESYVD GRLSCEQESS  180
SAGTDESRSM SVSGLNVDKL SIQNITDDDT HAQTAASISD FGIACSPYEA WMLTDLSNDQ  240
CDGEEDRIEA GYGSWDVSGE SLYSLWESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-235515825127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5YGU02e-47A0A2P5YGU0_GOSBA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-44myb domain protein 27