PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1050s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 482aa    MW: 52850.2 Da    PI: 6.0595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1050s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.19e-981004761374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 
                          lv+lL+e+Aea++ g+ ela+ +L rl+elasp++ ++m+Rlaayf  AL+  l + + ++ +     +   e++ ++++aa++l++++s
  Kalax.1050s0004.1.p 100 LVHLLMEAAEALT-GNRELARVILVRLKELASPTDgTNMERLAAYFSDALSGLLEH-GAHTKNVGaGGRGGGEHSPADVIAAFQLLQDMS 187
                          68********997.599*************9998769*****************99.5555555424555556679************** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelg 173
                          P++kf+h+taNqaIleav++e+r+Hi+D+di++G+QW++L+qaL +R+egpp  +lRiT++++   +      +++etg+rL  fA+++g
  Kalax.1050s0004.1.p 188 PYVKFGHFTANQAILEAVAQERRIHILDYDIMEGIQWASLMQALVTRKEGPPlpHLRITALSRGGGVgrrCIGTVQETGRRLVAFAASIG 277
                          ************************************************998777*********6555888999***************** PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adh.nsesFlerfleal 261
                          +p++f+    ++ e++++ + ++ +gEal+Vn+ l+l ++ ++  ++     ++L+   +l+P+++++ve+e ++  ++++F+ rf+++l
  Kalax.1050s0004.1.p 278 LPLSFHQCKLDSDEAFRPLSVKLARGEALIVNCLLHLPHFSHRAPASVA---SFLSGAETLNPRLITLVEEEeVKVaGDGKFAGRFMDTL 364
                          *******98899999999999*******************865555555...9****************98867778************* PP

                 GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                          ++ysal+dslea++p + ++r+ vE+++lg++i   +a   ++ +++ e  ++W e+l++ GF pv++s  + +qa+lll  ++ dgyrv
  Kalax.1050s0004.1.p 365 HHYSALYDSLEAGFPMHGRARALVEKVFLGPRIAGSLARIYQM-EAQAEPNRSWWEWLGSRGFMPVRFSFANHCQANLLLGLFN-DGYRV 452
                          *****************************************99.9999************************************.***** PP

                 GRAS 352 eeesgslv.lgWkdrpLvsvSaWr 374
                          e+ s+  + +gWk+r+L+++S W+
  Kalax.1050s0004.1.p 453 EQLSHNRLgIGWKSRRLLTASIWT 476
                          *88655555**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.9374456IPR005202Transcription factor GRAS
PfamPF035143.1E-95100476IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAMAMDETPV IDMNMVGMEF STYSNSTTTS LEEEAYWTTS CPPVLGWSDV FTAGDADLYG  60
LMESMIHETD SGSPLTSGES RSNLEMAISM DEEEGKGLRL VHLLMEAAEA LTGNRELARV  120
ILVRLKELAS PTDGTNMERL AAYFSDALSG LLEHGAHTKN VGAGGRGGGE HSPADVIAAF  180
QLLQDMSPYV KFGHFTANQA ILEAVAQERR IHILDYDIME GIQWASLMQA LVTRKEGPPL  240
PHLRITALSR GGGVGRRCIG TVQETGRRLV AFAASIGLPL SFHQCKLDSD EAFRPLSVKL  300
ARGEALIVNC LLHLPHFSHR APASVASFLS GAETLNPRLI TLVEEEEVKV AGDGKFAGRF  360
MDTLHHYSAL YDSLEAGFPM HGRARALVEK VFLGPRIAGS LARIYQMEAQ AEPNRSWWEW  420
LGSRGFMPVR FSFANHCQAN LLLGLFNDGY RVEQLSHNRL GIGWKSRRLL TASIWTSSKQ  480
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-54884766378Protein SCARECROW
5b3h_D1e-54884766378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019002.20.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-178NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
TrEMBLA0A2P6PX630.0A0A2P6PX63_ROSCH; Putative transcription factor GRAS family
STRINGEOY162270.0(Theobroma cacao)
STRINGXP_004292683.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-155GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]