PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1023s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 23552 Da PI: 6.5046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 82.3 | 1.3e-25 | 1 | 61 | 24 | 82 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 ++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as+ +++s+s++a Kalax.1023s0003.1.p 1 MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASALitSPSSNSQKA 61 9*****************************************9999977754222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.6E-19 | 1 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.962 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPALCAARIF QLTRELGHKS DGETIQWLLQ QAEPSIIAAT GTGTVPASAL ITSPSSNSQK 60 AVSLSAGLHQ KLDEYGGSRS NWTMVSGGHH LGTSNVWPHQ TQVSGLGFQI PPPPSNSGPA 120 GGANLGGSEG SNYLQKIGFS GFEMPQASLG HMSFTSFLSN QQMPGLELGL SQDGHIGVLN 180 PQALNQIYHQ MGHSRIHHQQ QQQQQNQEHS PAKDDSQDSE Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067277.1 | 2e-83 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-48 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 6e-82 | A0A067L058_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 4e-81 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-50 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1023s0003.1.p |