PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1005s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 268aa MW: 29353.5 Da PI: 4.7672

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1005s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.9	2.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ad+dv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.1005s0011.1.p 6 DTRFPAARIKKIMQADDDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSVHLKHCVQRYSIFDFLSEVVNK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-24	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	8.75E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	3.4E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DDDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQTGAK 60 TVSSVHLKHC VQRYSIFDFL SEVVNKVPDY SHSGTSGEVR TLSRRRKAAG DELTDSDEDS 120 KRSRLPEAGH AASGGRGRGR GRGRGRGRIG RVAEPDHNQQ DIEPESAFDA TQAADIKDRD 180 LPSDLTEEAD GLTNPAVGKF DLNAEIKENE STPALEMPDI LSEHPAIQQE KFPGWSLSEI 240 DRIGINPLQL ASTNNTLDDE DYDEEDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	137	147	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432367.1	1e-81	dr1-associated corepressor isoform X1
TrEMBL	V4SXS0	3e-80	V4SXS0_9ROSI; Uncharacterized protein
STRING	XP_006432367.1	4e-81	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-64	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Kalax.1005s0011.1.p