PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1004s0004.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 871aa    MW: 96255.7 Da    PI: 9.373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1004s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.2e-06168187626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          Cr+f   G C++G++C+F H+
  Kalax.1004s0004.2.p 168 CRDFTS-GRCRRGSNCPFLHS 187
                          777777.*************8 PP
2zf-CCCH19.22.2e-06259279526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C ffa+ G C+ G +C+F+H 
  Kalax.1004s0004.2.p 259 PCTFFAA-GNCRNGKSCRFSHH 279
                          7999999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0019162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5164187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5167187IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035254280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286254281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5257279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MDENGRKRTS KWDLKDGQRN LEDNGRENLR SGNYRAASNE YRSYSGRHSA PHIAESDVKY  60
PTDTKDVRSK YEVATSVREH ASGNRGTWRD NSLDRGNRGF SEAGTDWDED GGRRDFVRSP  120
RSSWKRPLRS TSRGRSRSRS RSPIRAYRLE SGVDARPRSK AEVPIQTCRD FTSGRCRRGS  180
NCPFLHSSTH NYEDRRYDFE HREESVRGGK YSQFNASDGC YNDYNKETSE PKREYDRNSR  240
GTSFNHGGDR DPRRSADIPC TFFAAGNCRN GKSCRFSHHI SSSSSSGGRT HDGRWRTNHS  300
PEKAGQMDRG TKFSDHVDTH TDYGKEGRSR TNRSPDRVDQ GVKSSETADP NLVEYGKESH  360
GKVVSPQPRS ISSSMNSRWG NNIETSYVPP GGPTIMDKVV EVEANQSSQW KTENPGSITR  420
ASEMKGVDNW IGDKMSPEWN PKVSSVRTVA VEEPAYAIQT SESVNHNVPP QASQLTHYVS  480
SVTPDVLEKP NFQQGFNSIN DAPTALSYDR NTGSNVVMNF NSSFLSSNSA QPGSHSGPNE  540
APGNLNALGQ GQFSLTTSHP GNENASAIRN STANYDMYSI TSNCEDPKVS EAISGATPAS  600
NMVSQAQLAQ LTDLSASLAH LLGKGQQLPQ FYAALNPPNP MPSLEISNGI VSQFPVESVL  660
PHPHIGSDKP YGLVCDNALQ MQPNISAMPT QYPLNPGVVR TMEDVKQEVP SRELNAGEAY  720
KNGHAEGNLS QKPDTDSKSN KKPKSILDES SKGKDKHDKP REGSPLENMD GVGKGDGGKK  780
IKDTKALRDF KHGLVNFVKD LLKPAWKDGQ IDKDGFKTIV KKVTDKVTAT IQEANIPQTP  840
EKVNHYLSAS KPKLTKLVQA YVDRHHKKQT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RGRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-08C3H family protein