PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0994s0012.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 335aa    MW: 37146.5 Da    PI: 7.6408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0994s0012.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-0885109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C  f   G C+ G++C+FaHg
  Kalax.0994s0012.4.p  85 FKTRVCAKFKL-GLCRNGENCNFAHG 109
                          69*********.*************9 PP
2zf-CCCH30.56.2e-10145168225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ f+ +  C+yGdrC+F H
  Kalax.0994s0012.4.p 145 KMKLCKKFSNGEVCPYGDRCNFLH 168
                          889*******66************ PP
3zf-CCCH30.94.7e-10229255127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f  +G+C++Gd+C FaHg+
  Kalax.0994s0012.4.p 229 WKTKLCCKFETNGFCSFGDKCGFAHGR 255
                          8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.0E-1480117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-882115IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-584110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.26784111IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-685109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892143171IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-7143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-10144169IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7145168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9226259IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5228255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-14228259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629229256IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7229255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSFTESQSPF MPPGLGASSD AIQVSSWQQY SINNQDYNNN AKFQQPRPPK RPREEENQSD  60
NVVIVPQRMP SSSIPVNKGI TNIFFKTRVC AKFKLGLCRN GENCNFAHGV EDLRQPPPNW  120
QELVGGREED RGSGNWDDEQ RIALKMKLCK KFSNGEVCPY GDRCNFLHED PKRLRDDSDS  180
VRFRESPAIN IGSKVNTAAG HGSGLDLTDA NLVNTASDAY RMNVRIEHWK TKLCCKFETN  240
GFCSFGDKCG FAHGRAELQG PVVRPEGELR SSGAFNTSMN PVVGPPNDIS SGIGNNAILN  300
EEQTGKKDFS KLKGSKKINR IYADWIDDLP LDAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276339.11e-116zinc finger CCCH domain-containing protein 39
TrEMBLB9SEP01e-113B9SEP0_RICCO; Uncharacterized protein
STRINGXP_002524459.11e-114(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-74C3H family protein