PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0984s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 275aa MW: 29208.8 Da PI: 8.8888

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0984s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.8	7e-30	54	107	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + Y+eClkNhA+++ gha+DGC+Efmp+ g eg+ +alkCaACgCHRnFHR+e+ Kalax.0984s0006.1.p 54 RPIYRECLKNHAINVMGHALDGCCEFMPA-GPEGSLDALKCAACGCHRNFHRKEE 107 568***********************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.6E-27	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-21	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.118	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.9E-26	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.85E-15	181	250	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	182	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.3E-24	189	245	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MMNSSLNTNT NHNTVTSGGG GGGNNVSLSR ARMVEALSQV QIQPAPAVTA PSSRPIYREC 60 LKNHAINVMG HALDGCCEFM PAGPEGSLDA LKCAACGCHR NFHRKEEAVG GEPGAMLYSL 120 SHPHLAHPGP GGFGSYYPHP APPGYLHLAP PRPLALPSSS GGGAAGGSQD DDVSNPNAIV 180 AAGGSSNGKK RFRTKFTLEQ KEKMLAMAER IGWRIQRAEE ELVQQFCQEA AVKRHVFKVW 240 MHNNKHTLGR AATTSNNHNN NNNGGSSRQQ QLMD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-25	189	247	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830269.1	2e-76	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q9SB61	1e-64	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2I4FF48	4e-75	A0A2I4FF48_JUGRE; zinc-finger homeodomain protein 1-like
STRING	Gorai.003G042700.1	1e-74	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Kalax.0984s0006.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]