PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0984s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26569.9 Da PI: 6.171 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.5 | 1.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n s rqvtfskRr g++KKAeEL vLCda+v +i+fsstgkl eyss Kalax.0984s0004.1.p 9 KKIDNVSARQVTFSKRRRGLFKKAEELAVLCDADVGLIVFSSTGKLSEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 51.8 | 3.5e-18 | 93 | 175 | 18 | 100 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++kL +e+ + +++R+l GedL+ L+++eL++Le+ Le +l+++ ++K e ++++i++lq k +l een++Lr++++e Kalax.0984s0004.1.p 93 NRNYTKLSQEVAEKSHQLRRLRGEDLQGLDIEELRELEKTLEFGLNRVIETKGEKIMNEINHLQAKGAQLMEENERLRRQVAE 175 57899***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.679 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.42E-38 | 3 | 70 | No hit | No description |
PRINTS | PR00404 | 2.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.054 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-16 | 93 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVREKIQIKK IDNVSARQVT FSKRRRGLFK KAEELAVLCD ADVGLIVFSS TGKLSEYSSS 60 SMKEILERYK MQSKYLEKLQ QPTPSLELQL VENRNYTKLS QEVAEKSHQL RRLRGEDLQG 120 LDIEELRELE KTLEFGLNRV IETKGEKIMN EINHLQAKGA QLMEENERLR RQVAEMSNNG 180 HVKLSGVSFS ETTAYEDGHS ESITNGSNNS NNGPPPESDD SSDTSLRLGL PYYG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261700.1 | 1e-108 | PREDICTED: MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 7e-99 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 3e-99 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A314LB82 | 1e-107 | A0A314LB82_NICAT; Mads-box protein jointless | ||||
STRING | XP_009783886.1 | 1e-107 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-90 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0984s0004.1.p |