PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0979s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 605aa    MW: 68274.8 Da    PI: 6.0162
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0979s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.91e-832346024374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 
                           L+++Ae v  ++l++a++lL +   l+s +g+++qR+++yf eAL++++ r++ +l+ +  ++  +  + +e+  + +l     +   P
  Kalax.0979s0003.1.p 234 SLFSAAESVVLEQLARATRLLDNCDLLSSCTGSTVQRVVHYFSEALREKIDRQSGRLSMKGLSKLRN-IHIEEACVIPHLvflsCYRRIP 322
                          699*************************************************666666444333333.333333333333444467788* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          + +  h++  qaI+e v+ +++vH+iDf +++G+ W  L+qaLasR+++p   l++T+v     +s+  +e  g+rL++fA+ lg+pf f
  Kalax.0979s0003.1.p 323 FTQPPHFAGMQAIMENVADSKKVHVIDFRVTYGVCWTILIQALASRDAPPLeYLKLTAVRT---NSNSDIEDAGKRLSDFAQCLGIPFAF 409
                          **********************************************9887669*******9...5799********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +v++++++ +l+ + ++++ +Ea+aV   + l ++l    +++++ d++++++  ++P ++v++e ea++n++ F +rf+eal yysa+f
  Kalax.0979s0003.1.p 410 RVVMVDDMLNLSEDIFELEDDEAVAVYAPYLLRTML----CIPDRLDHMMRVISCINPCIMVMIEVEANTNAPCFGKRFTEALFYYSAFF 495
                          ******************************999998....99999********************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+l++++ + + eri++E    g++i+n++++eg++r+ rh +l+ Wr  + ++G+++ +ls +   qa+l+ ++++ ++  +++ e +s
  Kalax.0979s0003.1.p 496 DCLATSMESSDPERIFLESSHCGQDIRNILTTEGEARTTRHVKLSIWRTFFARFGYTETKLSRSSLYQANLVRKEYPtGRYCNIKMECKS 585
                          *****************************************************************************88889******** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          lv+gWk+ p+vsvSaW+
  Kalax.0979s0003.1.p 586 LVFGWKGTPMVSVSAWK 602
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.743205581IPR005202Transcription factor GRAS
PfamPF035143.6E-81234602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MDGKSLTVGW KGTPLFFSFC LDICLSMHTL HHCLIKFECR TSADCHKDDG SGVWGQNEFD  60
EPEACQKPGF VFGTIRDESS DLGNHREEMR KVVLTDQQQR AQVPSSFASL PVQYYLKDRG  120
KMRWTPGENS NNVEKGDTAT FIYQAADIPE LYRSPLQQSH REIVSQSSTD SMCPKTDNKS  180
LTAEEIFKVA GKKFILSSSL EGVEGDPSRF SNQTDIHYSG FSEEQINDVE LAGSLFSAAE  240
SVVLEQLARA TRLLDNCDLL SSCTGSTVQR VVHYFSEALR EKIDRQSGRL SMKGLSKLRN  300
IHIEEACVIP HLVFLSCYRR IPFTQPPHFA GMQAIMENVA DSKKVHVIDF RVTYGVCWTI  360
LIQALASRDA PPLEYLKLTA VRTNSNSDIE DAGKRLSDFA QCLGIPFAFR VVMVDDMLNL  420
SEDIFELEDD EAVAVYAPYL LRTMLCIPDR LDHMMRVISC INPCIMVMIE VEANTNAPCF  480
GKRFTEALFY YSAFFDCLAT SMESSDPERI FLESSHCGQD IRNILTTEGE ARTTRHVKLS  540
IWRTFFARFG YTETKLSRSS LYQANLVRKE YPTGRYCNIK MECKSLVFGW KGTPMVSVSA  600
WKST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4123960127378Protein SCARECROW
5b3h_A4e-4123960126377Protein SCARECROW
5b3h_D4e-4123960126377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-56RGA-like 1