PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0959s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 356aa    MW: 39087.2 Da    PI: 5.6475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0959s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-183380148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +v+q+G  +W+++++  g+ R+ k+c++rw +yl
  Kalax.0959s0011.1.p 33 KGPWTPEEDIILVSYVQQHGASNWRAVPANAGLLRCSKSCRLRWTNYL 80
                         79******************************99************97 PP
2Myb_DNA-binding46.11.1e-1486130147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++ 
  Kalax.0959s0011.1.p  86 RGNFTDQEQKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTN 130
                          89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3872884IPR017930Myb domain
SuperFamilySSF466896.74E-3030127IPR009057Homeodomain-like
SMARTSM007174.2E-143282IPR001005SANT/Myb domain
PfamPF002492.5E-163380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-243487IPR009057Homeodomain-like
CDDcd001671.40E-113580No hitNo description
SMARTSM007171.7E-1485133IPR001005SANT/Myb domain
PROSITE profilePS5129418.66485135IPR017930Myb domain
PfamPF002499.5E-1486131IPR001005SANT/Myb domain
CDDcd001671.18E-1088131No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2388134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MERSPSRSDD HSHRNSSSGS KTTASASSDG LKKGPWTPEE DIILVSYVQQ HGASNWRAVP  60
ANAGLLRCSK SCRLRWTNYL RPGIKRGNFT DQEQKMIIHL QALLGNRWAA IASYLPQRTD  120
NDIKNYWNTN LRKKAIKNQL GHCGLGEDHE GGSSLLSDSV DQSAATKGQW ERRLQTDINL  180
AKQALSQALA VDDTDLEQAS SDQTRDQLMA GTSNSFIDSV TLSPTITTIY ASSTANISKL  240
LDGWMKKKEP AVPSAATSSY TATQFNGVNQ FGNITCASSS REYYDQFDEY METKPYVDSQ  300
VPLLEKWLMF DDGGNNAAAS SAPGGTSQDQ LAAHELMSTD VTTFDQQNII DSMFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25311342104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-253113556159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-253113556159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-253113525128MYB TRANSFORMING PROTEIN
1mse_C8e-26311342104C-Myb DNA-Binding Domain
1msf_C8e-26311342104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332081.11e-95myb-related protein 306-like
SwissprotQ9SCU73e-89MYB30_ARATH; Transcription factor MYB30
TrEMBLV7B1692e-93V7B169_PHAVU; Uncharacterized protein
STRINGXP_007138187.13e-94(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-89myb domain protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kaurilind E,Xu E,Brosché M
    A genetic framework for H2O2 induced cell death in Arabidopsis thaliana.
    BMC Genomics, 2015. 16: p. 837
    [PMID:26493993]
  3. Lee HG,Seo PJ
    The Arabidopsis MIEL1 E3 ligase negatively regulates ABA signalling by promoting protein turnover of MYB96.
    Nat Commun, 2016. 7: p. 12525
    [PMID:27615387]
  4. Serrano I, et al.
    A non canonical subtilase attenuates the transcriptional activation of defence responses in Arabidopsis thaliana.
    Elife, 2017.
    [PMID:27685353]
  5. Liao C,Zheng Y,Guo Y
    MYB30 transcription factor regulates oxidative and heat stress responses through ANNEXIN-mediated cytosolic calcium signaling in Arabidopsis.
    New Phytol., 2017. 216(1): p. 163-177
    [PMID:28726305]
  6. Lee HG,Kim J,Suh MC,Seo PJ
    The MIEL1 E3 Ubiquitin Ligase Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Stems.
    Plant Cell Physiol., 2017. 58(7): p. 1249-1259
    [PMID:28838126]
  7. Mabuchi K, et al.
    MYB30 links ROS signaling, root cell elongation, and plant immune responses.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(20): p. E4710-E4719
    [PMID:29712840]
  8. Zheng Y,Chen Z,Ma L,Liao C
    The Ubiquitin E3 Ligase RHA2b Promotes Degradation of MYB30 in Abscisic Acid Signaling.
    Plant Physiol., 2018. 178(1): p. 428-440
    [PMID:30030326]