PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0947s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 345aa MW: 39041.2 Da PI: 7.3883 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.6e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Kalax.0947s0007.1.p 34 VCTFYQK-GNCSYGSRCRYEHV 54 6******.***********997 PP | |||||||
2 | zf-CCCH | 20.5 | 8.7e-07 | 125 | 147 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg Kalax.0947s0007.1.p 125 RAICS-FAAAGSCPRGENCPHIHG 147 78999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.549 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.6E-5 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-4 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 6.48E-13 | 181 | 255 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 8.5E-10 | 184 | 250 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 9.81E-4 | 190 | 250 | No hit | No description |
SMART | SM00184 | 4.8E-7 | 191 | 248 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 8.2E-7 | 191 | 248 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.032 | 191 | 249 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 215 | 224 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.16 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 278 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ 60 TYEVPSSASF HQSLLSERGS VADPSQFTIN EATVSVPAWS QVPAQINLYD NEDFVDSRIL 120 DPADRAICSF AAAGSCPRGE NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL 180 QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS 240 ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC 300 FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRLSDFLAN LNMR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186621.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69 | ||||
Swissprot | Q5ZA07 | 1e-166 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A1U7ZUI3 | 0.0 | A0A1U7ZUI3_NELNU; E3 ubiquitin-protein ligase makorin isoform X1 | ||||
TrEMBL | A0A1U8A604 | 0.0 | A0A1U8A604_NELNU; E3 ubiquitin-protein ligase makorin isoform X2 | ||||
TrEMBL | A0A1U8Q470 | 0.0 | A0A1U8Q470_NELNU; E3 ubiquitin-protein ligase makorin isoform X3 | ||||
STRING | XP_010257277.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-161 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0947s0007.1.p |
Publications ? help Back to Top | |||
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