PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0938s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25254.1 Da PI: 11.3262 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 14 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l ++vk+ G ++W++ + m+ Rt+k+c++rw+++l Kalax.0938s0006.1.p 14 RGPWSPEEDDQLRKLVKKNGRRNWSKLGSFMN--RTGKSCRLRWHNHL 59 89*****************************7..************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.4e-16 | 70 | 112 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + T++Ed+ +v +k+ G++ W++Ia++++ gRt++q+k+rw++ Kalax.0938s0006.1.p 70 PITPQEDKVIVTMHKRVGNR-WSLIAQKLP-GRTDNQVKNRWNST 112 67******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.762 | 9 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 12 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-17 | 13 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 14 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.36E-15 | 16 | 59 | No hit | No description |
SMART | SM00717 | 8.8E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.727 | 69 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-13 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-21 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.58E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSENGEEGGD KLRRGPWSPE EDDQLRKLVK KNGRRNWSKL GSFMNRTGKS CRLRWHNHLK 60 PGVVPVTLGP ITPQEDKVIV TMHKRVGNRW SLIAQKLPGR TDNQVKNRWN STLRRRRQHA 120 LNQQQQRKAT GRATAPCANR VKPGPDLGGG CGSLAGPGRV SGPERLQYFG CIEGARSLMH 180 PVSPPAVRPF PCMAPPAPAN EPSSVIAQLK GVVEGICQEE LKLRNSML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-31 | 11 | 116 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-31 | 12 | 116 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-31 | 12 | 116 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147631.1 | 8e-35 | uncharacterized protein LOC100281240 | ||||
Swissprot | Q9LTF7 | 2e-31 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A061REC3 | 1e-33 | A0A061REC3_9CHLO; Myb proto-oncogene protein (Fragment) | ||||
TrEMBL | A0A3L6ENE5 | 2e-33 | A0A3L6ENE5_MAIZE; Transcription factor MYB44 | ||||
TrEMBL | B4FMQ3 | 2e-33 | B4FMQ3_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G145444_P01 | 3e-34 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 6e-34 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0938s0006.1.p |