PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0927s0006.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 761aa MW: 86386.2 Da PI: 7.0696 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.4 | 3.3e-20 | 59 | 154 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + ++ + k +r+r+++r+gC+a +++ k+ +w++t +++ Kalax.0927s0006.3.p 59 EFYCSFAKQCGFSIRRHRTRGReGVGRGITRRDFTCHRGGFPQLKPSDdgKLKLQRNRKSSRCGCQAYMRIVKRAdydIPEWRITAFSNV 148 6***************999877355667**************99988866778899**************99887665679********* PP FAR1 85 HnHela 90 HnHel Kalax.0927s0006.3.p 149 HNHELL 154 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-17 | 59 | 154 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-22 | 276 | 369 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.423 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.7E-9 | 553 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.3E-5 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MSELASAVKE ASENATGSSP DDIGTIEEMP EDTILSRQTS VSLVPCIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGR EGVGRGITRR DFTCHRGGFP QLKPSDDGKL KLQRNRKSSR 120 CGCQAYMRIV KRADYDIPEW RITAFSNVHN HELLKTTEVQ LLPAYCTISP DDKSRICMFS 180 KAGMSVRQML RLLELEKGVK LGSLPFTEVD VRNLLQSFRS IDGDNDAIDL LTICKNRKDK 240 EHDFKYDFKM DANNRLEHIA WSYPSCIQSY ETFGDCVIFD TTHRLDAYDM LLGLWVGVDN 300 HGMSCLFGCV LLRDENVQSF AWALKSFSGF MNNKSPQTLL TDENMWLKDA VSVEMPQTKH 360 AFCIWHITAK FSDWFSGMLG SLYDKWKADL QLLYNLQCVE DFEVGWLDMV NTYGLHGNKH 420 ISSLYALRTF WALPYLRGYF FAGMTKAFHS ESINAYTQRF LSVQSKLVNY VDQVAAIANY 480 KDQIGVKHKM QQKIQKFSLK TGSPIEAHAA SVLTPYAFNI LQEELVLAPQ YASLMVDENY 540 FIVRHHTKLD GGYKVLWSPN DEFISCSCQH FEFCGILCRH VLRVLSTNNC FHIQNQYLPA 600 RWREEPSARS FHQSSSGSDE KSCKVQLLKS MVSTLVAQSA ETEERLDTAC NQVALLLSRI 660 KGFTGPSVQD DNHIAYPSPS ASLLIPEVED SDSIVQSYSS GPPQDSYSLG KLKERRPRDN 720 MDAYKKRRRC SVPCWGQLEH NAAECQMMSD DLSGDGMGFL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028058977.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | F6HZ84 | 0.0 | F6HZ84_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g01120.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0927s0006.3.p |
Publications ? help Back to Top | |||
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