PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0919s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 305aa MW: 33917.5 Da PI: 9.5781 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.1 | 2.4e-18 | 225 | 258 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG+++++ + Kalax.0919s0009.1.p 225 CTHCDITKTPQWRAGPMGPKTLCNACGVRFKSGR 258 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.754 | 219 | 255 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-15 | 219 | 269 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-14 | 222 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 223 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.22E-13 | 224 | 273 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 225 | 250 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.4E-16 | 225 | 258 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MASVSHSHSH LFSFGLGRAP PQRRMAEPIF NYDDLNSFLD QFDDLSDPEL TVADNLNDLF 60 PAIWTEPSYL ELNPVPIPNG TRSEIMSPDL STGMGSSSNL PLNNESRSFI PVSVLESCRT 120 GPFIDHGIRM PAALTVPPVQ GRARTKRHRP PTFNPRPSVL PTAWPLPRHL PDNLSGSLEK 180 ISNAEMHRNV RKSKKLRVSS PNEIHQNQNK DPNFPPLQVE ADRKCTHCDI TKTPQWRAGP 240 MGPKTLCNAC GVRFKSGRLF PEYCPAASPT FSPTRHSNSH KKVLEMRKNI EKSTDHAHVT 300 VKAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-36 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0919s0009.1.p |