PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0916s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 277aa    MW: 30706.4 Da    PI: 4.652
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0916s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.51.2e-126471859
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfilelt 59
                         ++++P arikki++adedv +i+  +Pvl+ska elf+ +l 
  Kalax.0916s0012.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLC 47
                         5789**********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.1E-18348IPR009072Histone-fold
SuperFamilySSF471132.19E-10448IPR009072Histone-fold
PfamPF008087.7E-11847IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDYD IWKVLIGVCR  60
KLLPIMSLRL CCDEELYLMN SRYSIFDFLK EVVNKVPDYT HSGTSGEVQT ISRRRKGAGD  120
ELSDSDEYSK RSRLQEAVPG VGGGRGRGRG RGRGRVGHVA EPDDTQNDFE PESSAVNLDA  180
IQANNNNKGR ELPSDFKGDG DGLTNPVGKF DLNTEIKEKE STPYLATDDK VSAHSAIQSE  240
NAELCISEMD RMNFNPLQLG SMKSTFDDDE DYDEDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-14246549Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144153RGRGRGRGRG
2144154RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-46nuclear factor Y, subunit C11