PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0910s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 353aa    MW: 39384.3 Da    PI: 6.5075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0910s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.5e-27121182159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg+ WrKYGqK+++g+ +pr+YYrCt +   gC ++k+v+rs++dp++++itY+g+H ++
  Kalax.0910s0010.1.p 121 LDDGHGWRKYGQKDIQGAIHPRGYYRCTNRhvqGCLATKQVQRSDQDPTIFHITYTGQHSCT 182
                          58**************************988889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27114183IPR003657WRKY domain
PROSITE profilePS5081123.146116180IPR003657WRKY domain
SuperFamilySSF1182902.22E-24120182IPR003657WRKY domain
SMARTSM007744.6E-37121183IPR003657WRKY domain
PfamPF031067.1E-25122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEATRSNRPW EQQALINELK QGRELAKQLR NHLNPSTASS QTRQFLVEKI ISSYEKTLAK  60
LNRSSLPVAA SPSDNNTSSS KNSHRSQGSD HHASKKRKAM PKWTEQVQVQ VQSQTGLEGQ  120
LDDGHGWRKY GQKDIQGAIH PRGYYRCTNR HVQGCLATKQ VQRSDQDPTI FHITYTGQHS  180
CTKSANPTTQ PQQQPDEQQK RTKLFHTHDS FRFSLGVRKE QMSISLEEEQ MFPTFSSFPA  240
TSDSKSDDAY VFISSAEAEP EDQFMSAAED SFSPLYICPP TSDSDFYTPC HVAGFGLSQL  300
NVHRSESDLA DAAGSCLNSV SNSPMGVLDL HLDFPTGSAT TDFDSTFMFD FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20121181868OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899819.13e-90probable WRKY transcription factor 53
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-39WRKY family protein