PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0886s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 321aa    MW: 35011.2 Da    PI: 6.8622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0886s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l  ++k  G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0886s0001.1.p 14 KGAWTKEEDDRLTAYIKANGDGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding54.23.2e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +Edel+++ +  lG++ W++Ia++++ gRt++++k++w+++
  Kalax.0886s0001.1.p  67 RGNFTHDEDELIIHFHSILGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.523961IPR017930Myb domain
SuperFamilySSF466891.57E-2713108IPR009057Homeodomain-like
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002493.9E-131461IPR001005SANT/Myb domain
CDDcd001676.15E-91661No hitNo description
PROSITE profilePS5129427.37962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2665116IPR009057Homeodomain-like
SMARTSM007173.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1567111IPR001005SANT/Myb domain
CDDcd001673.91E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK ANGDGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDVKRGNF THDEDELIIH FHSILGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPATHQLIT RTKAPTTTSS AVDDVVPDED HHHNSQTTTT STTISFATVA NMMVGNNSAT  180
VENETAAASS ISLFAGGYID GIDTNVRHHK GFIPRTNRIE MEQHRQEGLA VAADGELSLE  240
LKISPPQQKL VSEERGLVEL DYCTCRLGLG LPTINGQDCC SCSGDEDYFS SGSGCAVSGF  300
DFLGLQGGVV GGDHGHQKQC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607200.16e-93myb-related protein 308
TrEMBLB7FIY92e-91B7FIY9_MEDTR; Uncharacterized protein
TrEMBLG7JNF61e-91G7JNF6_MEDTR; Myb transcription factor
STRINGAES893972e-92(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-84myb domain protein 7