PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0854s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 310aa    MW: 35160.4 Da    PI: 9.2491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0854s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-54121371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk
  Kalax.0854s0016.1.p  12 LPPGFRFHPTDEELIMCYLRNQAASRPCPV-SIIPEVDIYKFDPWQLPDKAEVGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDK 100
                          79****************************.89***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s +++ vg+kk Lvfy+gr pkg ktdW+mheyrl
  Kalax.0854s0016.1.p 101 AIHS-GSKYVGVKKALVFYSGRPPKGIKTDWIMHEYRL 137
                          ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-667165IPR003441NAC domain
PROSITE profilePS5100560.46712165IPR003441NAC domain
PfamPF023651.5E-2613137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKMGSGRQSS ELPPGFRFHP TDEELIMCYL RNQAASRPCP VSIIPEVDIY KFDPWQLPDK  60
AEVGENEWYF FSPRDRKYPN GVRPNRATVS GYWKATGTDK AIHSGSKYVG VKKALVFYSG  120
RPPKGIKTDW IMHEYRLTGS QFQPSARQNG TMRLDDWVLC RIYKKKPMAG RYMEPREVEE  180
PVRAQAEVPA QAQTNLASSE YTNDQKIPRT FSISNFLDMD YIGSISQLLN DTQSYNPAPE  240
TQSNGGTSTT SNSSSIMYNN HRGGTERFQQ GELTVSYPYT NQGRYQAANQ HIGQQMLRSL  300
NPVYGFQTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-711216917169NO APICAL MERISTEM PROTEIN
1ut4_B4e-711216917169NO APICAL MERISTEM PROTEIN
1ut7_A4e-711216917169NO APICAL MERISTEM PROTEIN
1ut7_B4e-711216917169NO APICAL MERISTEM PROTEIN
3swm_A5e-711216920172NAC domain-containing protein 19
3swm_B5e-711216920172NAC domain-containing protein 19
3swm_C5e-711216920172NAC domain-containing protein 19
3swm_D5e-711216920172NAC domain-containing protein 19
3swp_A5e-711216920172NAC domain-containing protein 19
3swp_B5e-711216920172NAC domain-containing protein 19
3swp_C5e-711216920172NAC domain-containing protein 19
3swp_D5e-711216920172NAC domain-containing protein 19
4dul_A4e-711216917169NAC domain-containing protein 19
4dul_B4e-711216917169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067682.11e-119NAC transcription factor 29
SwissprotK4BNG71e-114NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLR4N7L51e-118R4N7L5_JATCU; NAC transcription factor 027
STRINGXP_009598866.11e-118(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-106NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]