PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0851s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 24834.1 Da PI: 8.7652 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k++++ L H r+H Kalax.0851s0013.1.p 162 HECPVCYKVYKSGQALGGHKRSH 184 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.31E-8 | 4 | 27 | No hit | No description |
PROSITE profile | PS50157 | 9.993 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-8 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.062 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.31E-8 | 157 | 184 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.536 | 162 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.56 | 162 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 164 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEEKHKCKLC ARRFGSGRAL GGHMRSHFTI LPVPPKTQPT SLTGTPSSSS EAKNPSQLED 60 SVVLDDESET ESKSLSPSGS RRVGKRSISE WRKLGAIKKS KSKKRSTEQA VSSVSETCSE 120 EDLAMCLMLL SRDKWVRKEC PVGRRNQIFL ENGTGGGDVK IHECPVCYKV YKSGQALGGH 180 KRSHLFSSPS TAAAHSSDAD NVWLIDLNLP APLEDGGDMS HNQVPVLC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6QNN1 | 5e-39 | A0A2R6QNN1_ACTCH; Zinc finger protein | ||||
STRING | VIT_00s0229g00050.t01 | 1e-38 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 4e-31 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0851s0013.1.p |