PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0847s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 321aa    MW: 34753.9 Da    PI: 7.9888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0847s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29156214158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C+vkkkv+rsaed+++++ tY geHnh
  Kalax.0847s0018.1.p 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCQVKKKVQRSAEDQTMLVATYDGEHNH 214
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28147217IPR003657WRKY domain
PROSITE profilePS5081125.97151217IPR003657WRKY domain
SuperFamilySSF1182903.27E-24152217IPR003657WRKY domain
SMARTSM007742.4E-32156216IPR003657WRKY domain
PfamPF031062.2E-23157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEPSAWIDSS LSLALNLNPH YHPHPHPAPP PKPQIKEAEE LAEELSRVIG ENRKLTEMLA  60
TMYESYTALQ TQFEDLMRRT SAGSAKRKSP ESGSDGVQTD QSSSSSDDES NVFKKQRESC  120
SGGNCGGGAV AAGLMSRKPS SRVLVRIDKS DTSLIVKDGY QWRKYGQKVT RDNPSPRAYF  180
KCSFAPSCQV KKKVQRSAED QTMLVATYDG EHNHLPPSET ELPPHRSPVT TTNSVASSAI  240
GSSKPTVTLD LIQPVEEARL DRAGSGAAEG QDSRPVFQRF IVEQMASSLT NDPGFKAAVA  300
AVISGRMMDG NKGGMLGKWL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191552171375WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010275778.11e-79(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-62WRKY DNA-binding protein 40