PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0843s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 598aa MW: 66760.3 Da PI: 6.9475

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0843s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.4e-09	394	431	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ +qV++WF N R + Kalax.0843s0009.1.p 394 FEHflHPYPTDAEKHILARQTGLSRSQVSNWFINARVR 431 554459******************************88 PP
2	BELL	115.7	2.3e-37	261	329	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+ka+Lls+leeVd+rYk+y++q+++v+ssFea+ag g+a++Y +lA+ka+SrhFrcL+d i++qi Kalax.0843s0009.1.p 261 ELQKRKAQLLSMLEEVDRRYKHYCDQMKAVVSSFEAAAGSGAATVYSALASKAMSRHFRCLRDGIVDQI 329 89******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.4E-51	185	327	IPR006563	POX domain
Pfam	PF07526	9.9E-47	191	325	IPR006563	POX domain
PROSITE profile	PS50071	12.374	372	435	IPR001356	Homeobox domain
CDD	cd00086	2.58E-12	375	436	No hit	No description
SMART	SM00389	4.2E-10	375	439	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-17	376	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	379	441	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	392	431	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MEADAHCQKD KLKAMNSSST GFCYSDVSSA VNPSCIPAGL GNQIHTIDQS NPDQMFSLTS 60 NMEMIGYFPP ANDDQSSMVV TSNSWQDNHR LLVDDSSLGC AFSGEGIDQR RTSQRLSLSL 120 SSINPSGGFE SFELGHNSSP TPTAHHQTED HQLRCLSSRE GYYRKSLNSL QTEQPSNLQI 180 HQHVLPQFQL IRHSKYLKPA QELLSDFCSL GSNQSEQHHH YHRQKMAPNQ KVNRVSHWDH 240 NVHAGTDSSR SHNLYSLELL ELQKRKAQLL SMLEEVDRRY KHYCDQMKAV VSSFEAAAGS 300 GAATVYSALA SKAMSRHFRC LRDGIVDQIR ATKKAMGEKD DRVSRGETPR LRLLDQTLKQ 360 QKAFQQLNMM ESHPWRPHRG LPERSVSVLR AWLFEHFLHP YPTDAEKHIL ARQTGLSRSQ 420 VSNWFINARV RLWKPMVEEM YTEETKEEPE NTHTSNNNNT MSHPAAAHHQ LEHENKPGPE 480 QLIRINSDCL SSIINHHNSQ DGHEPPPQPP TVLHPFGAYN AVIELDFSSF SGSGVSLTLG 540 LQQHGESGGV SLAFPSPAAG DAPNGSMFYA SVMDGDQGQS LAYRSLMGAQ LLRDLAG*

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MEADAHCQKD KLKAMNSSST GFCYSDVSSA VNPSCIPAGL GNQIHTIDQS NPDQMFSLTS  60
NMEMIGYFPP ANDDQSSMVV TSNSWQDNHR LLVDDSSLGC AFSGEGIDQR RTSQRLSLSL  120
SSINPSGGFE SFELGHNSSP TPTAHHQTED HQLRCLSSRE GYYRKSLNSL QTEQPSNLQI  180
HQHVLPQFQL IRHSKYLKPA QELLSDFCSL GSNQSEQHHH YHRQKMAPNQ KVNRVSHWDH  240
NVHAGTDSSR SHNLYSLELL ELQKRKAQLL SMLEEVDRRY KHYCDQMKAV VSSFEAAAGS  300
GAATVYSALA SKAMSRHFRC LRDGIVDQIR ATKKAMGEKD DRVSRGETPR LRLLDQTLKQ  360
QKAFQQLNMM ESHPWRPHRG LPERSVSVLR AWLFEHFLHP YPTDAEKHIL ARQTGLSRSQ  420
VSNWFINARV RLWKPMVEEM YTEETKEEPE NTHTSNNNNT MSHPAAAHHQ LEHENKPGPE  480
QLIRINSDCL SSIINHHNSQ DGHEPPPQPP TVLHPFGAYN AVIELDFSSF SGSGVSLTLG  540
LQQHGESGGV SLAFPSPAAG DAPNGSMFYA SVMDGDQGQS LAYRSLMGAQ LLRDLAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	381	439	5	63	Homeobox protein Meis2
3k2a_B	1e-15	381	439	5	63	Homeobox protein Meis2
4xrm_A	1e-15	381	439	5	63	Homeobox protein Meis2
4xrm_B	1e-15	381	439	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018829277.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X1
Refseq	XP_018829278.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X1
Refseq	XP_018829279.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X1
Swissprot	Q38897	1e-127	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2I4FCA0	0.0	A0A2I4FCA0_JUGRE; homeobox protein BEL1 homolog isoform X1
STRING	EOY24826	1e-180	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-114	TALE family protein

Link Out ? help Back to Top
Phytozome	Kalax.0843s0009.1.p

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]