PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0843s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 39319.6 Da PI: 5.466 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++ + g+ R++k+c++rw +yl Kalax.0843s0006.1.p 14 RGLWSPEEDEKLIRYITAHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++ Kalax.0843s0006.1.p 67 RGRFTQEEEKLIISLHEVVGNR-WAQIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.176 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.18E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.067 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGHHTCCNQQ KVKRGLWSPE EDEKLIRYIT AHGYGCWSEV PDKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TQEEEKLIIS LHEVVGNRWA QIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 RMQHNLSTTA FHGGYTFSTA PDMTTEQYPF HYELLNYNPN PNNPSPFENF VGTKPLPTLD 180 TDDHHQEVPS LHPSFFMFDT SSVISQDSTA TTTQLLHIPS SASNSDLAWC FVDHQAVAVG 240 GHVEMGLSTD INFMLPALVD DGDPHHLLEL TYNDQCLEKQ HDLQQQGYQS TNSNNNDELL 300 SWDESQQCPN FLFWDNAVDG SAEDEIAPFS SLVGTGTSPY PPSLLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028076120.1 | 2e-97 | transcription factor MYB14-like | ||||
TrEMBL | A0A0E4B7Y0 | 8e-96 | A0A0E4B7Y0_POPPZ; MYB transcriptional factor | ||||
STRING | POPTR_0001s09810.1 | 4e-96 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 8e-83 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0843s0006.1.p |