PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0843s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 330aa MW: 36257.5 Da PI: 6.4417

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0843s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.4	1.6e-29	151	209	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs +prsYYrC+s+ gC ++k+ve+s+ dp++++itY+ +Hnh+ Kalax.0843s0002.1.p 151 TDLWAWRKYGQKPIKGSFYPRSYYRCSSSkGCAARKQVEQSSLDPNIFTITYTADHNHP 209 699**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-30	136	211	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-25	145	211	IPR003657	WRKY domain
PROSITE profile	PS50811	30.285	145	211	IPR003657	WRKY domain
SMART	SM00774	3.6E-34	150	210	IPR003657	WRKY domain
Pfam	PF03106	2.2E-24	152	209	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MIMDDNWGLH AVVNGCTQQA QQWNNAVDIQ EELLFHMGQN HHQLPDLPFD LISSPMSFDL 60 HELEDIYKLP FGDGLASGVM LASGSNPKLA VDMQQHHQQY EVFDGSSSSA YHLPGDNGTA 120 FVAAAAASNR AKRKNQQKRV VQHVTANGLS TDLWAWRKYG QKPIKGSFYP RSYYRCSSSK 180 GCAARKQVEQ SSLDPNIFTI TYTADHNHPH PTRRSSLSGV SKNKKALSAP PNKKPTPQPP 240 PPPTSSLPLK DSSSSNSPTM LNMSAPTTPL MVENTSREDG IKEECSTVAV EDGSMMDLGC 300 LGFEEEIGEM GFDGYQSWFP HWLDGRSTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	152	212	18	80	Disease resistance protein RRS1
5w3x_D	1e-19	152	212	18	80	Disease resistance protein RRS1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	8e-43	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Kalax.0843s0002.1.p