PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0829s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 649aa MW: 71490.6 Da PI: 6.593 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 278 | 298 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Kalax.0829s0001.1.p 278 PCPDFRK-GACRRGDMCEYAHG 298 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 6.37E-16 | 20 | 134 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.7E-10 | 53 | 126 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.104 | 57 | 164 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.0E-17 | 57 | 141 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0021 | 57 | 87 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 5.31E-15 | 59 | 135 | No hit | No description |
PROSITE profile | PS50088 | 11.114 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 8.0E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 278 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 278 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 278 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 66 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MNNLSIETDD TFASLLEFAA NNDIEGFKKW MVRAPPSTDV VGLWYIRLPG SKQLVLEQRT 60 PLMVAATYGS IDVLKLILSS SDADVNRTCG NTKSTALHCA ASGGSDNALE VVKLLLAAGG 120 DPNLADSNGR CPVDVIVVSP KSPDLKVSLQ QLLVRTSSVI EGDQAKCIPS LNSYHPVVSS 180 SPRIESPSSA FGSYSSRNAN FEEPPILCGL EKKEYLIDPT FPDIKNSIYG TDEFRMYSFK 240 IRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGIDC TRRVCFFAHT TEELRPLYVP SPHSNYSAGM DFAAAMNKLP 360 GSPSSVPVMS PSPFTPPMSP SANVSPSQLF WAPSIPSLNL PGSNLQSSRL RSSINARDLQ 420 AEEFAKIEES DAQQYQLLKD LTSHYGTNSL EMPDHLKTPT PLNLEDLFVA DSLSPCYVDS 480 PFGSSVHSPT HKSALLNQFQ QQKQGILSPI NTHISANNVD HHLLQGSYGE PYSGRMSPHN 540 LERSEPISPM NSRVLMLANR EKLRSLSFCE PGTNAAALVG SPLSNWGSIS GKVDWALSSE 600 ELDKLRRSSS FDMRNSRDDP DSIWAHSPIL EPAPEIRERA STSGTWIK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240870.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_008240871.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_021831470.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_021831471.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | M5WGB7 | 0.0 | M5WGB7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240870.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0829s0001.1.p |
Publications ? help Back to Top | |||
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