PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0810s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 355aa    MW: 39311.6 Da    PI: 9.5088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0810s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.58.6e-19194227134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+tt TplWR+gp+g+ktLCnaCG+++rk +
  Kalax.0810s0017.1.p 194 CSDCNTTRTPLWRSGPQGPKTLCNACGIRQRKAR 227
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-13188228No hitNo description
SMARTSM004012.6E-18188239IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.69188224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-16192228IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.62E-14193225No hitNo description
PfamPF003202.6E-16194227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMTPIFLNPP NPLYFNLNQD HHQEDHQQQQ VLLENSPFRP AIAASTTSLH LDPGLRMTAT  60
HSMSDQSPAF NDQLKASTNV FFHGESPSYG AQVISTDNYG SHNHDLFIFR QQADQDQHNF  120
NVNEGVVTTD NNGSSLRWMS SKIRMMRKMI NSNCPRTDPR GGSRIITSST SPDHSPQLGI  180
HSDNNHHSNV IRVCSDCNTT RTPLWRSGPQ GPKTLCNACG IRQRKARKAA MEAAAAATNS  240
SNEASSSTST KTTIKLVINK DKKKSRATSN TCVSQHSNKK QAPWKQHQAI NQLADSSHHS  300
NRSTSSSSSK QQLRFEEFAV NLLSKNAAFH RMFPQDEEEG ALLLMALSYG LIQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-22cytokinin-responsive gata factor 1