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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kalax.0797s0006.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
Trihelix |
| Protein Properties |
Length: 321aa MW: 35545.4 Da PI: 6.7052 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0797s0006.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47.9 | 3.6e-15 | 50 | 139 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+W++ + +Li+a e+ +l+rg+lk+++W+ev++ + + ++ ++ qCk++++ ++k+yk +k + +s+ ++p+f++l
Kalax.0797s0006.1.p 50 CWSEAATSVLIDAWGERYLALSRGNLKQKHWKEVADIVsssgeMCGKTPKTDMQCKNRIDTVKKKYKLEKSKMVASASPP-CSWPFFHKL 138
7***************************************999999************************9999874444.47******9 PP
trihelix 86 e 86
e
Kalax.0797s0006.1.p 139 E 139
7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MEDYDDDDDT PTPDPNDGRI TVSLAADAVS ADHLAHNAKP SSGGGAREDC WSEAATSVLI 60
DAWGERYLAL SRGNLKQKHW KEVADIVSSS GEMCGKTPKT DMQCKNRIDT VKKKYKLEKS 120
KMVASASPPC SWPFFHKLEF LIGPAKSPAP TRTHSNLHNT FKKQQQQPAR QDSDSSETDS 180
PDSPDSTDTD PPKPAKKQRF NHPISTATSH PNGKMNINPR GGSSSVGDLT EAILNLAQVY 240
EQAENAKLRL VVDMEKNRMN FTKELESQRM QLFMKTQMEI TQMKESAMRD SGHNHLHSQL 300
HKSETNLISN NIDNHTSDST *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 2e-45 | sequence-specific DNA binding transcription factors |
