PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0794s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 286aa    MW: 31613 Da    PI: 6.2503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0794s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.82.6e-24120178259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK++ ++++pr+Y++Ct + +C++ k+v++ ++dp + +it +g+H++e
  Kalax.0794s0012.1.p 120 ADGYAWRKYGQKPILNAKHPRNYFKCTNSpHCQALKRVQQMDDDPPMYKITRTGHHTCE 178
                          7**************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-25111179IPR003657WRKY domain
SuperFamilySSF1182904.18E-23111178IPR003657WRKY domain
PROSITE profilePS5081118.636114175IPR003657WRKY domain
SMARTSM007742.3E-30119179IPR003657WRKY domain
PfamPF031067.0E-23121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNPCRPESCL SADGELHVSD ELRRGRQAAT ELLGLIRQQT YLSTPNAPSS LSPDPATGLV  60
MRIIDSFSNS LSMLGCQESA PARGPSESNK NSSSSSGGRK CVKPRRGDYT WTQVTSTLVA  120
DGYAWRKYGQ KPILNAKHPR NYFKCTNSPH CQALKRVQQM DDDPPMYKIT RTGHHTCENL  180
SNPSSLVNDM ASSIMFNFEM SKNDEKSKSA DRIATDLSRP QFGRVKEEES KNQQPGSSYS  240
THDNLPLLEN VETAAMTSPK DEQWSSLDDF DYLIGSLEFN EDASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-161211771068OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-24WRKY DNA-binding protein 70