PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0793s0013.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 529aa    MW: 59069 Da    PI: 4.8192
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0793s0013.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1103.1e-341645272373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea + +++el + +   +se ++p g++++R  +yf +   ++ a+           +++s   +++   a+k+f+++ P+ 
  Kalax.0793s0013.3.p 164 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETLERFSFYFFRSNDQQYAN----------LRQES---QKNFEPAFKAFYQILPLG 240
                          6899999*************************************9887776666..........34443...4567789999******** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                          +f+hl+ N+aIl a+  + e++ ++Dfd+++G+QW++ l++L      +  l +T ++ +        s+ + e+t++rL   A+++gv+
  Kalax.0793s0013.3.p 241 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapSHWNFESTQRRLICHATSVGVN 327
                          ***************9887999********************964...45699999988554477778999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqeadh..nsesFl 254
                          ++ + +   ++ dl ++e++ +   ++ la n+++ l ++   ++  +++ +e+L++ k++ ++       ++++ e e+     ++++ 
  Kalax.0793s0013.3.p 328 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLRIAKHVTADsttggggIITLGEGEVLKrtKDSDYS 411
                          ****97...77788.67776655569**************8..55556668**********98655666669*******54335899*** PP

                 GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                          + f+e l +  al+ +le ++p +  e+++++E  +++++i++    ++ +       +++  +   + G++ ++ls++   +ak l++ 
  Kalax.0793s0013.3.p 412 TFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIAP 495
                          **********************9877999***********98755544444......445555677899*******************99 PP

                 GRAS 344 vk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                           + s g r   ++++++vl W + pLv vS W
  Kalax.0793s0013.3.p 496 GEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 527
                          884455444468899***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.709137506IPR005202Transcription factor GRAS
PfamPF035141.1E-31164527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MRLMMKMLLC TRFPRKKMKR AQPLDPLLPF YYMGAAQSGA ETTFLHINSP FAGSVIVDGE  60
SEIFSSSGDS PQAQMWCYKD LEFGLLAEGK IYMEDGELEL FDGGEISMLW DDCVGSFNPE  120
RSAVSSPYSI VNTRDCSVES TSPVRSSVTC LKDDMDIDDQ LSLLHLLKAH AEATDREQTE  180
LSEVIQRCIS EKVNPFGETL ERFSFYFFRS NDQQYANLRQ ESQKNFEPAF KAFYQILPLG  240
RFAHLASNSA ILAAMPADTE TLNVVDFDVG EGIQWAPVLE TLGREKKALS LTCIKWEGDC  300
PTSAPSHWNF ESTQRRLICH ATSVGVNLKV QEVEMGDLVS EIAKSAGRRD WLAFNCQVGL  360
PHMARARNHE RVTEFLRIAK HVTADSTTGG GGIITLGEGE VLKRTKDSDY STFFMERLAH  420
SQALLQALEW SFPDQLAEAK MTMECLFMSP NISSPEWLQQ WKYVKQQGDD QADIGLEGLK  480
LSQSSLLEAK GLIAPGEHSF GVRKGGKNEN EIVLEWGGTP LVRVSTWI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438GC471e-132A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-13GRAS family protein