PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0793s0013.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 512aa    MW: 56903.1 Da    PI: 4.5772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0793s0013.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS110.22.8e-341475102373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea + +++el + +   +se ++p g++++R  +yf +   ++ a+           +++s   +++   a+k+f+++ P+ 
  Kalax.0793s0013.2.p 147 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETLERFSFYFFRSNDQQYAN----------LRQES---QKNFEPAFKAFYQILPLG 223
                          6899999*************************************9887776666..........34443...4567789999******** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                          +f+hl+ N+aIl a+  + e++ ++Dfd+++G+QW++ l++L      +  l +T ++ +        s+ + e+t++rL   A+++gv+
  Kalax.0793s0013.2.p 224 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapSHWNFESTQRRLICHATSVGVN 310
                          ***************9887999********************964...45699999988554477778999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqeadh..nsesFl 254
                          ++ + +   ++ dl ++e++ +   ++ la n+++ l ++   ++  +++ +e+L++ k++ ++       ++++ e e+     ++++ 
  Kalax.0793s0013.2.p 311 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLRIAKHVTADsttggggIITLGEGEVLKrtKDSDYS 394
                          ****97...77788.67776655569**************8..55556668**********98655666669*******54335899*** PP

                 GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                          + f+e l +  al+ +le ++p +  e+++++E  +++++i++    ++ +       +++  +   + G++ ++ls++   +ak l++ 
  Kalax.0793s0013.2.p 395 TFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIAP 478
                          **********************9877999***********98755544444......445555677899*******************99 PP

                 GRAS 344 vk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                           + s g r   ++++++vl W + pLv vS W
  Kalax.0793s0013.2.p 479 GEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 510
                          884455444468899***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.709120489IPR005202Transcription factor GRAS
PfamPF035149.6E-32147510IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKRAQPLDPL LPFYYMGAAQ SGAETTFLHI NSPFAGSVIV DGESEIFSSS GDSPQAQMWC  60
YKDLEFGLLA EGKIYMEDGE LELFDGGEIS MLWDDCVGSF NPERSAVSSP YSIVNTRDCS  120
VESTSPVRSS VTCLKDDMDI DDQLSLLHLL KAHAEATDRE QTELSEVIQR CISEKVNPFG  180
ETLERFSFYF FRSNDQQYAN LRQESQKNFE PAFKAFYQIL PLGRFAHLAS NSAILAAMPA  240
DTETLNVVDF DVGEGIQWAP VLETLGREKK ALSLTCIKWE GDCPTSAPSH WNFESTQRRL  300
ICHATSVGVN LKVQEVEMGD LVSEIAKSAG RRDWLAFNCQ VGLPHMARAR NHERVTEFLR  360
IAKHVTADST TGGGGIITLG EGEVLKRTKD SDYSTFFMER LAHSQALLQA LEWSFPDQLA  420
EAKMTMECLF MSPNISSPEW LQQWKYVKQQ GDDQADIGLE GLKLSQSSLL EAKGLIAPGE  480
HSFGVRKGGK NENEIVLEWG GTPLVRVSTW I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653403.11e-131PREDICTED: nodulation-signaling pathway 2 protein
RefseqXP_028077641.11e-131nodulation-signaling pathway 2 protein-like
TrEMBLA0A438GC471e-132A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-13GRAS family protein