PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0793s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 529aa MW: 59069 Da PI: 4.8192 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 110 | 3.1e-34 | 164 | 527 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL + Aea + +++el + + +se ++p g++++R +yf + ++ a+ +++s +++ a+k+f+++ P+ Kalax.0793s0013.1.p 164 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETLERFSFYFFRSNDQQYAN----------LRQES---QKNFEPAFKAFYQILPLG 240 6899999*************************************9887776666..........34443...4567789999******** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175 +f+hl+ N+aIl a+ + e++ ++Dfd+++G+QW++ l++L + l +T ++ + s+ + e+t++rL A+++gv+ Kalax.0793s0013.1.p 241 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapSHWNFESTQRRLICHATSVGVN 327 ***************9887999********************964...45699999988554477778999******************* PP GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqeadh..nsesFl 254 ++ + + ++ dl ++e++ + ++ la n+++ l ++ ++ +++ +e+L++ k++ ++ ++++ e e+ ++++ Kalax.0793s0013.1.p 328 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLRIAKHVTADsttggggIITLGEGEVLKrtKDSDYS 411 ****97...77788.67776655569**************8..55556668**********98655666669*******54335899*** PP GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 + f+e l + al+ +le ++p + e+++++E +++++i++ ++ + +++ + + G++ ++ls++ +ak l++ Kalax.0793s0013.1.p 412 TFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIAP 495 **********************9877999***********98755544444......445555677899*******************99 PP GRAS 344 vk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373 + s g r ++++++vl W + pLv vS W Kalax.0793s0013.1.p 496 GEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 527 884455444468899***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.709 | 137 | 506 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-31 | 164 | 527 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MRLMMKMLLC TRFPRKKMKR AQPLDPLLPF YYMGAAQSGA ETTFLHINSP FAGSVIVDGE 60 SEIFSSSGDS PQAQMWCYKD LEFGLLAEGK IYMEDGELEL FDGGEISMLW DDCVGSFNPE 120 RSAVSSPYSI VNTRDCSVES TSPVRSSVTC LKDDMDIDDQ LSLLHLLKAH AEATDREQTE 180 LSEVIQRCIS EKVNPFGETL ERFSFYFFRS NDQQYANLRQ ESQKNFEPAF KAFYQILPLG 240 RFAHLASNSA ILAAMPADTE TLNVVDFDVG EGIQWAPVLE TLGREKKALS LTCIKWEGDC 300 PTSAPSHWNF ESTQRRLICH ATSVGVNLKV QEVEMGDLVS EIAKSAGRRD WLAFNCQVGL 360 PHMARARNHE RVTEFLRIAK HVTADSTTGG GGIITLGEGE VLKRTKDSDY STFFMERLAH 420 SQALLQALEW SFPDQLAEAK MTMECLFMSP NISSPEWLQQ WKYVKQQGDD QADIGLEGLK 480 LSQSSLLEAK GLIAPGEHSF GVRKGGKNEN EIVLEWGGTP LVRVSTWI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A438GC47 | 1e-132 | A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-13 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0793s0013.1.p |