PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0791s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 683aa    MW: 74961.5 Da    PI: 6.5948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0791s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.6e-20543640296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  +
  Kalax.0791s0013.1.p 543 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--S 629
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kalax.0791s0013.1.p 630 DiKCGKYMIRG 640
                          77999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-27536648IPR015300DNA-binding pseudobarrel domain
CDDcd100159.68E-34540641No hitNo description
SuperFamilySSF1019364.45E-22541635IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306542644IPR003340B3 DNA binding domain
SMARTSM010196.5E-19542644IPR003340B3 DNA binding domain
PfamPF023624.8E-16543639IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKDDTGVAEY EKSDNLLHAA PLDSAGMEDN DVMLDLSCFG GCGYDSAAAA MEEADHQDLM  60
DSAAAIFCDD LIPPLPDFQC MSSSSSSSSS VKPVAYKSTA SSSVSSTSSS WAVLRSESEE  120
HNAVAGGYTS HHDHSHGHHP QQVVREQSNG LDEDGDIGCM DVMETLSYID LLDESGQVWG  180
YKDSPIFYSS PVEAFQAENE LQRPEPMAET HTEGLDKSED LAMVFFEWLK SNRESISAED  240
LRSIKLKKST IESAAKRLGN GKDGMKRLLQ LILEWVQHHQ LQRKPSREEG EAAAAAQPQF  300
PNHPYPDTNN FQPDLSHTSP WSVGSSAGLD PMMAVGVPAP FGHLDQPWPP LCMNYDNSAN  360
AGQNLTPAAH PFGAAAFNQY PCQYYPAVGN VSYVNGAVSE EVFVRTGSAA TKEARKKRMA  420
RQRRFLPHHR HHHHHSSSGN GNAHGQHHGR NGLSNQMRML AGAGQLGRVN MDESCANISR  480
PPSGGYWAYL HNASPPQPPH LPVVPNSGNS IQGNEESPSY QRPIALDRRQ GSKPEKNLRF  540
LLQKVLKQSD VGSLGRIVLP KKEAETHLPQ LTARDGINIA MEDIGTSNVW NMRYRFWPNN  600
KSRMYLLENT GDFVRSNGLQ EGDFIVIYSD IKCGKYMIRG VKVRQQGPKP DIRRSGKALK  660
KNTWPTSNGS PFAPPSPKTP LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-375386461109B3 domain-containing transcription factor FUS3
6j9b_D6e-375386461109B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907276.11e-142B3 domain-containing transcription factor ABI3
TrEMBLA0A2C9UPV51e-138A0A2C9UPV5_MANES; Uncharacterized protein
STRINGevm.model.supercontig_8.1871e-141(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-109B3 family protein