PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0790s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 344aa MW: 37393.9 Da PI: 6.9804 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 152 | 210 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ C ++k+ver+++dp+++++tY+ +Hnh+ Kalax.0790s0014.1.p 152 SDIWSWRKYGQKPIKGSPYPRGYYKCSSSkACLARKQVERNRTDPTMFIVTYTADHNHP 210 79*************************9989***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-30 | 138 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.752 | 146 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 149 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-34 | 151 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-25 | 153 | 210 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEPDWDLHAV VRGFAAINKT APSAVAAPTT AAPLFSSTRD VDDQKHHVFC PTNLAAPDQL 60 HELYSPYLLN PPARTQSVQP TISSYLVALE ASKKRTQQQQ QQQLLGTIST TSPAKTITPS 120 VPAPHSQTSH KPKRRKSQQK KVCHVPAEAL SSDIWSWRKY GQKPIKGSPY PRGYYKCSSS 180 KACLARKQVE RNRTDPTMFI VTYTADHNHP APTHKNSLAG TTRNTNPLSS PSSTAHDDTN 240 LHISKPCSSS SMGTMSPTAS LGDEVLQLTD KMESKSADIG GEDISRTNLV DDVMGFLDMD 300 VTDDFFEDLD EIAGPPMDGC SPDHVLPSFP CLANSSSTKC DMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-21 | 136 | 213 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-21 | 136 | 213 | 2 | 80 | Disease resistance protein RRS1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 9e-67 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0790s0014.1.p |