PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0781s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 330aa    MW: 36463.8 Da    PI: 6.1163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0781s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.2e-18220254135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.0781s0003.1.p 220 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 254
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.308214250IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-16214264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-15217252IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-15217278No hitNo description
CDDcd002024.35E-15219266No hitNo description
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
PfamPF003206.8E-16220254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEATPPAAPE YLAYDGAAAA VAPEAMRGGS DVTNNKSVVT DQFLVEEFFD FSNEEDEELV  60
LSGNANASEF QSIKAESGSS VTLLVDSSCN SSLGDFGNSN LTSELCVPYD DLAELEWVST  120
FAEESFSSED IEKLQLISGM SARPEEAASA AHGHRPDPNP PKYRPEILVP GKARSKRPRT  180
APGSWSSRIL LVSDDPKPVR KPKPVKKYGA EYLPVDGRKC LHCQTDKTPQ WRTGPMGPKT  240
LCNACGVRYK SGRLVPEYRP ASSPTFVQTK HSNSHRKVLE LRRQKEMMMG THQQHQRYLE  300
QYRSMSFDGS NGEDYLIHRR MGPDFGQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596902.11e-108GATA transcription factor 12-like
SwissprotO826321e-81GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A200RC111e-107A0A200RC11_9MAGN; GATA transcription factor
STRINGcassava4.1_010069m1e-108(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-76GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]